Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 1.7e-208 729.2 380 100.0
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.6e-195 686.0 380 95.0
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-195 686.0 380 95.0
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.7e-195 685.3 380 95.3
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 6.1e-195 684.1 380 94.7
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-194 682.9 380 94.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-190 668.7 380 91.8
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 2.3e-189 665.6 380 91.6
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.5e-188 662.1 381 91.6
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 8.0e-187 657.1 381 89.2
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 3.7e-184 648.3 381 89.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 3.7e-184 648.3 381 89.8
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 4.1e-183 644.8 383 89.0
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.7e-182 642.1 380 88.2
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.8e-181 638.3 379 88.7
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 8.6e-181 637.1 379 89.7
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 8.6e-181 637.1 382 88.7
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.5e-172 609.8 379 87.3
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.4e-159 565.8 421 73.4
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.9e-146 521.2 370 76.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.1e-140 503.8 383 70.5
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 1.5e-140 503.4 386 69.4
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 7.3e-140 501.1 378 71.4
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 9.6e-140 500.7 377 71.4
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 6.2e-139 498.0 378 71.2
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.1e-138 497.3 377 70.3
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 2.4e-138 496.1 326 78.5
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 3.1e-138 495.7 355 74.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 4.0e-138 495.4 381 70.1
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.0e-137 493.0 379 68.9
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 5.8e-137 491.5 379 69.7
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.3e-136 490.3 386 70.2
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.7e-136 490.0 324 76.5
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.7e-136 490.0 380 70.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 3.2e-135 485.7 371 69.8
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 9.3e-135 484.2 379 68.9
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.2e-134 483.8 328 76.2
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.6e-134 483.4 384 68.5
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 2.1e-134 483.0 350 72.3
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-134 482.6 377 69.0
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-134 482.6 377 69.0
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.5e-134 482.3 354 70.9
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.6e-134 481.9 378 69.0
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.0e-133 480.7 374 69.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.0e-133 480.7 328 75.3
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.0e-133 479.2 326 75.5
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 3.0e-133 479.2 383 66.8
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 3.9e-133 478.8 378 68.5
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 5.1e-133 478.4 381 68.5
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 6.7e-133 478.0 383 68.7
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 6.7e-133 478.0 337 73.6
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.1e-132 477.2 381 68.2
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.9e-132 476.5 326 75.8
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.9e-132 476.5 396 66.4
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 4.3e-132 475.3 393 66.7
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.3e-132 475.3 412 63.3
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 5.6e-132 474.9 329 74.2
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 5.6e-132 474.9 383 68.4
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 7.4e-132 474.6 342 71.1
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 7.4e-132 474.6 326 75.5
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.6e-132 474.2 378 68.5
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 9.6e-132 474.2 383 66.8
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.3e-131 473.8 365 70.7
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.6e-131 473.4 328 75.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.8e-131 472.6 387 66.7
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 3.7e-131 472.2 382 66.8
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 3.7e-131 472.2 383 67.9
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 8.1e-131 471.1 327 74.6
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.1e-130 470.7 379 68.6
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.4e-130 469.5 377 67.1
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.4e-130 469.5 344 70.3
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.1e-130 469.2 330 71.8
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 9.0e-130 467.6 384 67.7
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.0e-129 466.5 364 67.9
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 2.6e-129 466.1 377 65.5
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 2.6e-129 466.1 312 76.3
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 3.4e-129 465.7 364 70.1
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 4.5e-129 465.3 377 66.3
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 4.5e-129 465.3 382 65.7
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 1.3e-128 463.8 383 64.8
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.7e-128 463.4 383 64.5
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.9e-128 462.6 322 72.4
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 2.9e-128 462.6 369 68.3
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.4e-128 461.5 337 70.9
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.4e-127 460.3 377 67.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.4e-127 460.3 384 66.4
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.4e-127 460.3 324 72.5
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.4e-127 460.3 324 71.0
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.9e-127 459.9 323 72.4
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 2.4e-127 459.5 296 76.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 5.5e-127 458.4 329 70.2
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 7.1e-127 458.0 338 70.1
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 4.6e-126 455.3 323 70.9
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 7.9e-126 454.5 299 75.6
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 4.8e-123 445.3 276 77.5
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 8.2e-123 444.5 378 63.5
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.8e-122 443.4 368 64.4
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 6.9e-122 441.4 418 60.3
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 3.4e-121 439.1 317 71.0
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.4e-121 439.1 354 66.4
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.0e-120 437.6 276 76.1
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 3.2e-119 432.6 402 61.2
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 5.5e-119 431.8 365 63.6
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 5.5e-119 431.8 423 58.4
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.2e-118 430.6 276 75.4
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.7e-118 429.5 385 60.8
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-117 427.2 395 60.3
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.3e-117 427.2 395 60.3
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.3e-117 427.2 366 63.9
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 6.7e-117 424.9 405 59.0
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 6.7e-117 424.9 342 65.2
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.1e-116 424.1 377 61.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-116 423.7 404 60.1
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.9e-116 423.3 418 57.7
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 2.5e-116 422.9 384 59.1
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 5.7e-116 421.8 400 59.8
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 5.7e-116 421.8 400 59.8
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 9.7e-116 421.0 421 56.8
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 2.8e-115 419.5 360 65.6
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 4.8e-115 418.7 409 58.4
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.6e-110 403.7 283 75.6
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 5.7e-108 395.2 319 67.7
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 6.3e-107 391.7 372 61.6
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.4e-106 390.6 340 62.6
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 9.1e-106 387.9 362 58.3
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 6.7e-101 371.7 285 68.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.3e-96 357.5 306 66.7
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.7e-94 349.0 208 80.8
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.0e-93 346.3 340 59.1
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.0e-85 321.2 392 46.7
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.7e-85 318.5 190 83.2
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.5e-84 317.4 345 48.7
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.5e-84 315.1 281 64.4
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.7e-83 313.9 281 64.4
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.8e-82 310.5 401 46.1
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.2e-79 299.7 260 60.4
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.0e-69 266.2 268 57.5
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.0e-68 263.8 272 57.7
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 9.8e-68 261.5 261 50.2
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.9e-63 247.3 243 60.9
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-58 230.3 174 67.2
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 9.2e-58 228.4 162 72.8
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-57 227.3 174 66.7
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-57 226.9 174 66.7
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-55 221.1 130 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 5.1e-40 169.5 155 55.5
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-39 167.9 110 73.6
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-38 163.7 98 79.6
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-37 161.8 111 71.2
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-31 141.0 72 88.9
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 7.3e-31 139.0 131 58.8
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-30 138.3 72 86.1
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.1e-30 137.5 238 46.6
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 3.1e-29 133.7 74 83.8
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-25 120.9 59 89.8
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.7e-25 120.6 114 45.6
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 4.0e-21 106.7 130 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 2.6e-20 104.0 232 35.3
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 4.5e-20 103.2 69 75.4
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 8.4e-19 99.0 141 41.8
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 9.3e-18 95.5 75 62.7
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.3e-16 91.7 48 89.6
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.9e-15 87.8 56 78.6
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 6.2e-14 82.8 56 76.8
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 6.2e-14 82.8 53 69.8
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.9e-11 73.9 58 65.5
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 1.2e-09 68.6 164 36.6
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.6e-09 66.6 173 39.3
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 4.3e-07 60.1 28 100.0
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 4.3e-07 60.1 28 100.0
BraA06t26504Z Brassica rapa HOM05D004120 ORTHO05D033838 3.7e-06 57.0 29 89.7


User provided reference genes

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