Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-63 246.1 123 100.0
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-63 246.1 123 100.0
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-63 246.1 123 100.0
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-63 246.1 123 100.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 1.4e-63 246.1 123 100.0
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 2.0e-62 242.3 123 98.4
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 1.3e-61 239.6 123 96.7
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 1.3e-61 239.6 123 96.7
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 4.3e-57 224.6 123 87.0
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 4.3e-57 224.6 123 87.0
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 9.6e-57 223.4 123 87.0
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 2.1e-56 222.2 123 86.2
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 2.1e-56 222.2 123 87.0
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 4.7e-56 221.1 123 89.4
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 6.9e-55 217.2 123 88.6
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 2.0e-54 215.7 123 83.7
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 2.0e-54 215.7 123 83.7
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 2.4e-52 208.8 123 84.6
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 3.2e-52 208.4 124 84.7
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 4.6e-51 204.5 115 88.7
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 5.1e-50 201.1 119 83.2
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 3.9e-42 174.9 123 74.8
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 8.4e-37 157.1 121 62.8
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 3.3e-25 118.6 124 52.4
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 5.7e-25 117.9 129 52.7
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 9.7e-25 117.1 121 52.1
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.3e-24 116.7 123 50.4
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.6e-24 116.3 123 50.4
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 3.7e-24 115.2 127 51.2
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 6.3e-24 114.4 125 48.0
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 6.3e-24 114.4 125 51.2
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 1.1e-23 113.6 126 50.0
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 1.1e-23 113.6 123 51.2
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.4e-23 113.2 123 48.8
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.4e-23 113.2 129 51.2
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 1.8e-23 112.8 131 48.9
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 2.4e-23 112.5 126 50.8
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-23 112.1 123 48.8
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.1e-23 112.1 123 48.8
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 4.1e-23 111.7 123 49.6
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 4.1e-23 111.7 130 50.0
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 4.1e-23 111.7 130 50.0
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 4.1e-23 111.7 128 48.4
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 5.3e-23 111.3 121 52.1
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 5.3e-23 111.3 129 46.5
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 6.9e-23 110.9 127 49.6
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 9.0e-23 110.5 129 45.7
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 9.0e-23 110.5 125 49.6
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 1.2e-22 110.2 125 50.4
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 1.2e-22 110.2 128 48.4
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.2e-22 110.2 121 50.4
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 2.6e-22 109.0 129 51.2
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 2.6e-22 109.0 128 48.4
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 2.6e-22 109.0 125 48.8
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.6e-22 109.0 125 48.8
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 7.6e-22 107.5 128 48.4
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 7.6e-22 107.5 128 48.4
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 7.6e-22 107.5 132 48.5
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 7.6e-22 107.5 125 48.0
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 7.6e-22 107.5 121 52.1
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 1.0e-21 107.1 128 47.7
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 1.0e-21 107.1 130 43.8
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 1.3e-21 106.7 129 43.4
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.3e-21 106.7 131 48.9
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.3e-21 106.7 126 48.4
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 2.2e-21 105.9 136 43.4
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 2.2e-21 105.9 131 46.6
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 2.2e-21 105.9 128 46.9
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 2.9e-21 105.5 126 48.4
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 3.8e-21 105.1 130 46.9
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 8.5e-21 104.0 129 46.5
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.1e-20 103.6 137 43.1
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 1.1e-20 103.6 129 44.2
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 1.1e-20 103.6 134 45.5
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.1e-20 103.6 123 48.0
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.1e-20 103.6 123 48.0
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.1e-20 103.6 133 44.4
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 1.4e-20 103.2 114 50.0
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.4e-20 103.2 129 46.5
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.4e-20 103.2 129 46.5
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.4e-20 103.2 123 48.0
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 3.2e-20 102.1 133 43.6
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 4.2e-20 101.7 117 47.9
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.5e-20 101.3 129 45.7
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 7.2e-20 100.9 135 43.0
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 7.2e-20 100.9 137 44.5
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 7.2e-20 100.9 130 40.8
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 7.2e-20 100.9 123 48.0
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.2e-19 100.1 136 44.1
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 1.2e-19 100.1 134 40.3
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 1.2e-19 100.1 135 40.7
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.6e-19 99.8 111 50.5
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 1.6e-19 99.8 128 45.3
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 2.7e-19 99.0 128 45.3
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 2.7e-19 99.0 131 43.5
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 3.6e-19 98.6 104 46.2
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 6.1e-19 97.8 108 50.0
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 1.4e-18 96.7 127 43.3
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 2.3e-18 95.9 129 41.1
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 3.0e-18 95.5 92 52.2
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 3.0e-18 95.5 126 41.3
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 6.7e-18 94.4 118 46.6
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.1e-17 93.6 118 45.8
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 5.7e-17 91.3 108 46.3
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 9.7e-17 90.5 128 42.2
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.4e-15 86.7 138 38.4
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-15 85.5 129 40.3
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 9.1e-15 84.0 138 39.1
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 3.4e-14 82.0 144 35.4
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 4.5e-14 81.6 118 39.8
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 6.5e-13 77.8 120 39.2
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 7.2e-12 74.3 118 40.7
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 9.4e-12 73.9 117 39.3
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.1e-11 72.8 102 44.1
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 2.3e-10 69.3 124 39.5
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 6.7e-10 67.8 78 48.7
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 8.8e-10 67.4 126 37.3
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 3.3e-09 65.5 97 38.1
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 9.7e-09 63.9 71 46.5
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.4e-06 55.5 121 35.5
Mapoly0047s0021 Marchantia polymorpha HOM05D001618 ORTHO05D001486 3.4e-06 55.5 104 29.8


User provided reference genes

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