Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 4.7e-202 707.6 349 100.0
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 3.6e-186 654.8 350 93.4
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 3.1e-185 651.7 347 92.5
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 4.5e-184 647.9 350 92.9
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 5.8e-184 647.5 348 92.2
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 4.9e-183 644.4 346 91.6
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 1.4e-182 642.9 348 91.7
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 2.2e-175 619.0 346 89.3
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 1.9e-174 615.9 346 88.4
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 3.2e-174 615.1 343 89.2
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 4.3e-171 604.7 349 87.4
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 1.3e-170 603.2 350 86.6
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 1.0e-159 567.0 363 79.3
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 5.0e-143 511.5 324 75.9
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 2.4e-137 492.7 330 71.2
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 8.5e-135 484.2 311 74.0
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 1.9e-134 483.0 333 70.0
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 2.5e-134 482.6 311 73.3
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 5.5e-134 481.5 311 73.6
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 7.2e-134 481.1 311 73.0
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 7.2e-134 481.1 302 73.8
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 2.3e-132 476.1 329 69.0
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 3.0e-132 475.7 302 72.8
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 3.0e-132 475.7 329 69.3
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 5.2e-132 474.9 302 74.5
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 5.2e-132 474.9 289 76.1
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 1.2e-131 473.8 303 73.6
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 2.0e-131 473.0 314 72.3
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 3.4e-131 472.2 299 73.2
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 4.4e-131 471.9 324 70.4
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 5.7e-131 471.5 305 73.1
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 1.3e-130 470.3 332 69.0
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 3.7e-130 468.8 318 71.1
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 4.8e-130 468.4 301 72.8
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 6.3e-130 468.0 301 72.1
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 8.3e-130 467.6 304 72.4
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 1.4e-129 466.8 343 66.8
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.4e-129 466.8 315 70.8
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 1.4e-129 466.8 332 68.1
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 1.4e-129 466.8 303 73.3
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 1.4e-129 466.8 329 68.7
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 2.4e-129 466.1 305 72.5
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 4.1e-129 465.3 284 74.6
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 1.6e-128 463.4 290 75.2
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 2.0e-128 463.0 321 71.0
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 2.7e-128 462.6 289 73.4
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 4.5e-128 461.8 297 72.4
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 5.9e-128 461.5 348 66.1
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 2.2e-127 459.5 306 68.3
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.9e-127 459.1 285 71.9
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 3.8e-127 458.8 285 72.3
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 1.1e-126 457.2 347 64.8
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 1.9e-126 456.4 285 71.6
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 2.5e-126 456.1 298 72.8
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 2.5e-126 456.1 329 67.5
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 7.2e-126 454.5 304 68.8
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 1.2e-125 453.8 305 71.5
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.2e-125 453.8 334 65.3
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 2.1e-125 453.0 290 72.4
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 2.8e-125 452.6 355 63.9
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 2.8e-125 452.6 328 65.9
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 3.6e-125 452.2 287 73.5
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 4.7e-125 451.8 297 72.4
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 1.4e-124 450.3 284 71.8
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 1.4e-124 450.3 339 65.2
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 2.3e-124 449.5 310 66.5
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 3.0e-124 449.1 349 63.0
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 5.2e-124 448.4 297 69.7
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 5.2e-124 448.4 297 69.7
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 6.8e-124 448.0 288 72.2
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 8.8e-124 447.6 347 63.1
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 2.0e-123 446.4 284 72.9
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 2.4e-121 439.5 286 69.6
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 7.0e-121 438.0 346 62.7
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 3.5e-120 435.6 293 67.2
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 4.5e-120 435.3 291 67.0
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 5.9e-120 434.9 269 74.0
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 5.2e-116 421.8 334 61.1
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 1.2e-115 420.6 307 65.5
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 7.5e-115 417.9 298 66.4
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 1.4e-113 413.7 286 65.7
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 1.0e-111 407.5 291 61.5
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 2.3e-111 406.4 252 73.0
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 8.6e-111 404.4 357 56.9
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 1.6e-109 400.2 245 74.3
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 1.8e-108 396.7 318 59.7
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 1.2e-107 394.0 282 62.4
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 3.4e-107 392.5 244 72.1
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 3.7e-106 389.0 309 62.5
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 1.4e-105 387.1 279 66.7
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 3.5e-104 382.5 244 73.4
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 1.7e-103 380.2 287 59.2
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 2.5e-102 376.3 288 62.5
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 9.9e-99 364.4 319 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 1.3e-95 354.0 283 56.2
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 1.1e-89 334.3 214 73.4
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 3.6e-77 292.7 195 68.7
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 1.5e-75 287.3 292 50.0
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 6.7e-63 245.4 170 68.2
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 1.8e-55 220.7 144 70.8
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 7.2e-49 198.7 110 79.1
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 1.1e-46 191.4 114 72.8
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 3.4e-43 179.9 285 37.5
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 9.4e-41 171.8 105 78.1
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 2.1e-40 170.6 118 70.3
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 8.5e-34 148.7 108 60.2
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 1.1e-33 148.3 155 52.3
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 3.7e-29 133.3 85 72.9
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 8.5e-26 122.1 114 53.5
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 7.2e-25 119.0 140 47.1
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 2.7e-11 73.9 49 65.3
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 2.3e-10 70.9 55 54.5
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 6.5e-10 69.3 43 69.8
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 4.7e-08 63.2 43 60.5
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 6.1e-08 62.8 42 64.3


User provided reference genes

Program Settings