Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09427 Brassica carinata HOM05D006211 ORTHO05D007202 2.0e-81 305.8 167 100.0
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 3.2e-71 271.9 167 85.6
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 3.2e-71 271.9 167 85.6
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 1.6e-70 269.6 167 86.2
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 1.6e-70 269.6 167 86.2
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 2.4e-63 245.7 170 78.2
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 6.9e-58 227.6 171 74.3
Aa31LG9G15460 Aethionema arabicum HOM05D006211 ORTHO05D007202 3.4e-57 225.3 171 77.8
Sp4g17690 Schrenkiella parvula HOM05D006211 ORTHO05D007202 5.5e-55 218.0 171 78.4
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 7.1e-55 217.6 172 72.1
AT2G35470 Arabidopsis thaliana HOM05D006211 ORTHO05D007202 1.2e-54 216.9 173 72.3
BolC4t27918H Brassica oleracea HOM05D006211 ORTHO05D007202 1.3e-53 213.4 167 71.3
Carub.0004s1716 Capsella rubella HOM05D006211 ORTHO05D007202 6.7e-53 211.1 174 71.3
BcaC02g07713 Brassica carinata HOM05D006211 ORTHO05D007202 8.7e-53 210.7 167 71.9
BcaB06g28843 Brassica carinata HOM05D006211 ORTHO05D007202 1.5e-52 209.9 171 76.6
THA.LOC104798487 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 6.2e-51 204.5 171 71.9
THA.LOC104814422 Tarenaya hassleriana HOM05D006211 ORTHO05D007202 5.8e-49 198.0 172 69.2
BraA04t18191Z Brassica rapa HOM05D006211 ORTHO05D007202 8.4e-48 194.1 170 72.9
A04p26920 Brassica napus HOM05D006211 ORTHO05D007202 7.4e-44 181.0 193 64.2
C04p64310 Brassica napus HOM05D006211 ORTHO05D007202 7.4e-44 181.0 193 64.2
C04p12710 Brassica napus HOM05D006211 ORTHO05D007202 5.3e-42 174.9 140 67.9
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 3.6e-30 135.6 172 47.7
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 8.2e-27 124.4 170 48.2
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 1.2e-25 120.6 170 49.4
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 2.6e-25 119.4 172 48.3
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 5.0e-24 115.2 173 48.0
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 6.5e-24 114.8 170 47.1
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 1.1e-23 114.0 170 47.6
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 3.2e-23 112.5 168 47.0
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 5.5e-23 111.7 179 44.1
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 1.2e-22 110.5 177 46.3
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 2.1e-22 109.8 167 50.3
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 3.6e-22 109.0 175 42.9
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 4.7e-22 108.6 177 45.2
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 1.0e-21 107.5 180 42.2
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 1.0e-21 107.5 170 45.9
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 3.9e-21 105.5 177 42.9
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 5.2e-21 105.1 180 43.9
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 1.1e-20 104.0 172 44.2
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 1.1e-20 104.0 175 46.3
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 1.1e-20 104.0 170 43.5
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 2.0e-20 103.2 173 39.9
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 2.0e-20 103.2 174 46.6
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 2.6e-20 102.8 171 43.9
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 2.6e-20 102.8 176 44.9
MD06G1025300 Malus domestica HOM05D006211 ORTHO05D007202 2.6e-20 102.8 183 46.4
Gohir.D03G175400 Gossypium hirsutum HOM05D006211 ORTHO05D007202 5.7e-20 101.7 169 48.5
Gorai.003G184400 Gossypium raimondii HOM05D006211 ORTHO05D007202 5.7e-20 101.7 169 48.5
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 1.3e-19 100.5 173 40.5
Ciclev10002672m.g Citrus clementina HOM05D006211 ORTHO05D007202 1.7e-19 100.1 181 45.3
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 1.7e-19 100.1 175 43.4
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 2.2e-19 99.8 178 45.5
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 2.8e-19 99.4 177 43.5
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 2.8e-19 99.4 177 43.5
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 4.8e-19 98.6 172 42.4
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 6.3e-19 98.2 171 39.8
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 8.2e-19 97.8 177 42.9
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.4e-18 97.1 176 44.9
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 2.4e-18 96.3 174 43.1
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 4.1e-18 95.5 173 43.4
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 7.0e-18 94.7 168 45.2
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 9.1e-18 94.4 175 40.6
MD16G1281100 Malus domestica HOM05D006211 ORTHO05D007202 1.2e-17 94.0 185 46.5
FAN13G1488 Fragaria x ananassa HOM05D006211 ORTHO05D007202 2.6e-17 92.8 169 41.4
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 4.5e-17 92.0 168 44.6
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 5.9e-17 91.7 169 39.1
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 2.2e-16 89.7 172 40.7
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 2.9e-16 89.4 167 40.7
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 8.5e-16 87.8 171 41.5
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 1.1e-15 87.4 171 40.9
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 1.5e-15 87.0 173 41.0
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 7.2e-15 84.7 179 38.0
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 1.2e-14 84.0 179 38.0
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 2.1e-14 83.2 121 48.8
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 3.6e-14 82.4 171 37.4
MELO3C003431.2 Cucumis melo HOM05D006211 ORTHO05D007202 4.7e-14 82.0 169 44.4
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 6.1e-14 81.6 178 36.0
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 1.4e-13 80.5 121 42.1
HanXRQChr02g0049381 Helianthus annuus HOM05D006211 ORTHO05D007202 3.0e-13 79.3 147 38.1
Sed0017013 Sechium edule HOM05D006211 ORTHO05D007202 4.0e-13 79.0 105 49.5
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 5.2e-13 78.6 180 37.8
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 8.8e-13 77.8 142 39.4
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 8.8e-13 77.8 142 39.4
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 1.2e-12 77.4 174 37.4
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 4.4e-12 75.5 113 45.1
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 5.7e-12 75.1 170 35.3
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 7.5e-12 74.7 118 43.2
TAR375G0881 Trochodendron aralioides HOM05D006211 ORTHO05D007202 9.7e-12 74.3 167 35.3
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 1.3e-11 73.9 169 35.5
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 1.3e-11 73.9 169 35.5
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 2.8e-11 72.8 143 41.3
Nn3g19409 Nelumbo nucifera HOM05D006211 ORTHO05D007202 2.8e-11 72.8 122 37.7
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 2.8e-11 72.8 142 40.8
HanXRQChr13g0394911 Helianthus annuus HOM05D006211 ORTHO05D007202 4.8e-11 72.0 172 39.0
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 8.2e-11 71.2 94 46.8
Eucgr.E00236 Eucalyptus grandis HOM05D006211 ORTHO05D007202 1.1e-10 70.9 96 45.8
Glyma.09G207000 Glycine max HOM05D006211 ORTHO05D007202 1.1e-10 70.9 115 45.2
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 1.8e-10 70.1 113 43.4
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.4e-10 69.7 169 41.4
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 4.1e-10 68.9 163 38.0
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 5.3e-10 68.6 172 36.6
Actinidia17894 Actinidia chinensis HOM05D006211 ORTHO05D007202 7.0e-10 68.2 107 42.1
VMungo1215G0299 Vigna mungo HOM05D006211 ORTHO05D007202 1.2e-09 67.4 142 39.4
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 1.6e-09 67.0 97 46.4
SGA_v2.0_scaffold6G03154 Striga asiatica HOM05D006211 ORTHO05D007202 1.6e-09 67.0 167 33.5
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 2.7e-09 66.2 173 36.4
Lj2g0003916 Lotus japonicus HOM05D006211 ORTHO05D007202 2.7e-09 66.2 171 36.8
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 3.5e-09 65.9 140 36.4
Medtr5g029620 Medicago truncatula HOM05D006211 ORTHO05D007202 1.0e-08 64.3 169 32.5
Actinidia17897 Actinidia chinensis HOM05D006211 ORTHO05D007202 1.7e-08 63.5 111 38.7
DCAR_004283 Daucus carota HOM05D006211 ORTHO05D007202 6.5e-08 61.6 92 44.6
GSVIVG01013097001 Vitis vinifera HOM05D006211 ORTHO05D007202 3.2e-07 59.3 85 43.5
ECA233G1983 Erigeron canadensis HOM05D006211 ORTHO05D007202 4.2e-07 58.9 156 39.1
Psat2g138960 Pisum sativum HOM05D006211 ORTHO05D007202 4.2e-07 58.9 116 38.8
MSTRG.13745 Avicennia marina HOM05D006211 ORTHO05D007202 9.4e-07 57.8 36 69.4
Aqoxy3G02212 Aquilegia oxysepala HOM05D006211 ORTHO05D007202 1.2e-06 57.4 107 37.4
Lalb_Chr16g0381161 Lupinus albus HOM05D006211 ORTHO05D007202 1.2e-06 57.4 171 29.8
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 1.6e-06 57.0 144 33.3
PSO782G5418 Papaver somniferum HOM05D006211 ORTHO05D007202 3.6e-06 55.8 107 39.3


User provided reference genes

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