Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 4.4e-226 787.7 429 100.0
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 5.7e-189 664.5 439 83.8
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 3.7e-188 661.8 440 86.6
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 3.1e-187 658.7 445 84.5
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.0e-182 643.7 439 84.7
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 1.7e-177 626.3 439 83.1
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 4.7e-175 618.2 439 82.0
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 7.4e-165 584.3 435 75.9
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 2.5e-160 569.3 429 74.4
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 5.5e-160 568.2 436 77.1
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 2.1e-159 566.2 437 74.1
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 8.0e-159 564.3 433 75.1
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 8.0e-159 564.3 433 75.1
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 5.2e-158 561.6 445 74.4
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 3.1e-155 552.4 453 72.8
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 1.4e-150 537.0 438 71.7
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 4.8e-148 528.5 436 69.7
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 4.8e-148 528.5 436 69.7
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 2.4e-147 526.2 434 70.0
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 2.0e-146 523.1 436 69.5
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 1.7e-145 520.0 434 69.4
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 3.0e-89 333.2 434 52.8
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 2.7e-74 283.5 469 47.1
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 1.4e-67 261.2 214 70.6
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.7e-64 249.2 462 40.0
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 5.1e-57 226.1 527 35.9
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 8.8e-57 225.3 539 34.7
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 5.7e-56 222.6 552 34.6
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 1.7e-55 221.1 563 35.2
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 2.2e-55 220.7 521 37.8
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 4.8e-55 219.5 477 36.7
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 4.8e-55 219.5 541 37.9
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 1.8e-54 217.6 546 33.7
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 4.1e-54 216.5 531 36.9
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 4.1e-54 216.5 535 36.3
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 4.1e-54 216.5 513 36.1
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 5.3e-54 216.1 510 34.5
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 2.0e-53 214.2 564 35.6
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 3.5e-53 213.4 508 35.0
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 5.9e-53 212.6 529 37.8
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 1.7e-52 211.1 137 80.3
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 3.8e-52 209.9 572 34.6
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 6.5e-52 209.1 538 37.5
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 8.5e-52 208.8 550 35.5
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 1.5e-51 208.0 520 36.5
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 2.5e-51 207.2 520 36.5
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 2.5e-51 207.2 520 36.5
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 4.2e-51 206.5 475 34.9
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 5.5e-51 206.1 522 36.4
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 5.5e-51 206.1 516 34.9
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 1.6e-50 204.5 563 33.2
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 1.6e-50 204.5 557 33.0
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 2.7e-50 203.8 519 36.4
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 4.7e-50 203.0 534 33.7
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.0e-49 201.8 542 35.1
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.4e-49 201.4 526 37.1
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.4e-49 201.4 534 33.9
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 1.8e-49 201.1 526 35.6
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.3e-49 200.7 558 33.3
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 2.3e-49 200.7 529 33.8
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 3.0e-49 200.3 533 31.7
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 5.2e-49 199.5 523 35.4
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 5.2e-49 199.5 516 35.7
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 5.2e-49 199.5 521 37.8
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 6.7e-49 199.1 520 37.5
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 8.8e-49 198.7 534 32.8
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 8.8e-49 198.7 534 32.8
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.5e-48 198.0 533 33.2
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 1.5e-48 198.0 515 36.3
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.5e-48 198.0 568 33.3
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.4e-48 196.4 529 36.9
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 4.4e-48 196.4 531 33.7
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 5.7e-48 196.1 512 35.7
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 9.7e-48 195.3 440 36.4
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.7e-47 194.5 514 37.0
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 2.2e-47 194.1 521 32.4
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 2.8e-47 193.7 516 35.9
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 3.7e-47 193.4 512 37.9
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 4.8e-47 193.0 535 33.6
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 6.3e-47 192.6 514 37.5
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 8.2e-47 192.2 487 35.7
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 1.4e-46 191.4 551 35.8
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.4e-46 190.7 494 33.4
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 7.0e-46 189.1 534 34.6
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.2e-45 188.3 517 31.9
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 1.6e-45 188.0 540 31.7
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 3.5e-45 186.8 512 35.0
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 3.5e-45 186.8 542 34.1
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 3.5e-45 186.8 491 33.2
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 5.9e-45 186.0 555 33.3
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 7.7e-45 185.7 508 32.3
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 1.0e-44 185.3 516 36.0
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 1.0e-44 185.3 516 36.0
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 1.0e-44 185.3 514 34.4
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 2.2e-44 184.1 482 34.2
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 2.9e-44 183.7 531 34.5
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 3.8e-44 183.3 540 33.1
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 5.0e-44 183.0 433 36.3
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 6.5e-44 182.6 521 34.4
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 1.1e-43 181.8 564 32.6
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.2e-43 180.3 540 33.5
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 4.2e-43 179.9 502 34.3
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 4.2e-43 179.9 509 31.8
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 5.5e-43 179.5 495 32.3
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 9.4e-43 178.7 485 35.1
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 2.1e-42 177.6 487 34.1
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 2.7e-42 177.2 442 34.8
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 3.6e-42 176.8 489 33.7
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 4.7e-42 176.4 535 31.6
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 8.0e-42 175.6 478 33.5
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 3.0e-41 173.7 473 33.4
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 4.0e-41 173.3 489 32.1
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 6.8e-41 172.6 526 34.8
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.2e-40 171.8 495 31.5
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 1.5e-40 171.4 421 35.2
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 2.0e-40 171.0 491 32.8
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 2.6e-40 170.6 485 35.1
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 3.7e-39 166.8 472 31.8
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 3.7e-39 166.8 454 32.8
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 4.8e-39 166.4 560 32.9
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 4.8e-39 166.4 516 32.2
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 8.3e-39 165.6 510 32.5
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 1.1e-38 165.2 510 31.2
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 3.1e-38 163.7 425 36.0
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 9.1e-38 162.2 516 33.3
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.0e-37 161.0 506 33.0
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 4.5e-37 159.8 484 33.7
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 5.9e-37 159.5 516 30.4
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 1.3e-36 158.3 529 30.4
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 2.2e-36 157.5 490 31.2
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 6.5e-36 156.0 495 31.3
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 1.1e-35 155.2 461 31.9
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 1.1e-35 155.2 490 32.7
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 1.9e-35 154.5 508 29.9
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 2.5e-35 154.1 523 31.2
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 2.5e-35 154.1 364 37.9
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 3.2e-35 153.7 479 35.7
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 1.4e-33 148.3 568 30.5
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 3.0e-33 147.1 522 30.7
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 6.8e-33 146.0 437 33.0
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 2.0e-32 144.4 478 30.1
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 9.8e-32 142.1 567 28.9
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 8.3e-31 139.0 527 30.0
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 1.1e-30 138.7 509 31.2
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 1.4e-30 138.3 571 29.4
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.8e-30 137.9 331 35.6
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 1.8e-30 137.9 349 34.1
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 2.4e-30 137.5 482 31.7
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 1.2e-29 135.2 523 31.5
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 1.2e-29 135.2 523 31.5
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.3e-28 131.7 499 30.9
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 2.3e-28 131.0 533 29.1
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.9e-28 130.6 497 30.2
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 6.6e-28 129.4 515 29.1
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.6e-26 124.8 496 31.0
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 2.8e-26 124.0 493 31.2
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 2.8e-26 124.0 575 27.8
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 6.1e-26 122.9 308 36.4
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 6.1e-26 122.9 282 35.1
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 8.0e-26 122.5 459 30.9
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 1.0e-25 122.1 460 30.4
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 2.3e-25 120.9 517 29.2
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 4.0e-25 120.2 350 34.0
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 4.4e-24 116.7 296 34.8
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 4.4e-24 116.7 377 30.2
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 9.8e-24 115.5 282 36.2
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 2.2e-23 114.4 429 30.3
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 1.4e-22 111.7 262 35.5
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 4.1e-22 110.2 377 31.6
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 7.8e-21 105.9 283 38.5
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 7.8e-21 105.9 521 28.4
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 5.6e-19 99.8 325 33.2
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 6.2e-18 96.3 295 33.6
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 1.0e-17 95.5 282 39.4
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.0e-17 95.5 434 28.6
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 3.1e-17 94.0 256 34.0
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 1.2e-16 92.0 440 27.0
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 9.8e-16 89.0 148 39.2
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 3.7e-15 87.0 267 36.3
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.1e-14 85.5 209 35.4
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 3.0e-12 77.4 195 32.8
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 5.0e-12 76.6 212 32.5
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 2.5e-11 74.3 251 32.3
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 5.6e-11 73.2 313 27.8
vmacro08822 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 6.8e-09 66.2 298 28.5
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 2.0e-08 64.7 441 24.5


User provided reference genes

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