Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09343 Brassica carinata HOM05D007554 ORTHO05D009569 5.5e-197 691.0 419 100.0
A05p09220 Brassica napus HOM05D007554 ORTHO05D009569 4.1e-160 568.5 419 83.5
BraA05t19878Z Brassica rapa HOM05D007554 ORTHO05D009569 2.0e-159 566.2 419 83.8
BcaC02g11778 Brassica carinata HOM05D007554 ORTHO05D009569 6.4e-153 544.7 419 80.9
C04p11490 Brassica napus HOM05D007554 ORTHO05D009569 6.4e-153 544.7 419 80.9
BolC4t22799H Brassica oleracea HOM05D007554 ORTHO05D009569 6.4e-153 544.7 419 80.9
CARHR130930 Cardamine hirsuta HOM05D007554 ORTHO05D009569 3.8e-129 465.7 423 67.6
Thhalv10017640m.g Eutrema salsugineum HOM05D007554 ORTHO05D009569 9.6e-125 451.1 397 71.5
AL4G32830 Arabidopsis lyrata HOM05D007554 ORTHO05D009569 2.1e-124 449.9 424 66.0
Sp4g18930 Schrenkiella parvula HOM05D007554 ORTHO05D009569 3.3e-117 426.0 397 66.2
Carub.0004s1847 Capsella rubella HOM05D007554 ORTHO05D009569 5.6e-117 425.2 428 63.8
AT2G36650 Arabidopsis thaliana HOM05D007554 ORTHO05D009569 1.0e-102 377.9 336 69.9
Aa31LG5G21850 Aethionema arabicum HOM05D007554 ORTHO05D009569 5.9e-90 335.5 422 57.6
BcaB01g03819 Brassica carinata HOM05D007554 ORTHO05D009569 5.7e-85 318.9 422 54.7
BraA03t11273Z Brassica rapa HOM05D007554 ORTHO05D009569 2.2e-81 307.0 422 53.8
A03p20230 Brassica napus HOM05D007554 ORTHO05D009569 3.0e-78 296.6 447 50.6
THA.LOC104823478 Tarenaya hassleriana HOM05D007554 ORTHO05D009569 6.3e-76 288.9 439 43.5
BolC3t14766H Brassica oleracea HOM05D007554 ORTHO05D009569 1.5e-72 277.7 303 64.4
BcaC01g05644 Brassica carinata HOM05D007554 ORTHO05D009569 1.2e-69 268.1 335 58.8
C03p23720 Brassica napus HOM05D007554 ORTHO05D009569 2.8e-68 263.5 303 63.0
Atru.chr8.1675 Acer truncatum HOM05D007554 ORTHO05D009569 3.9e-49 199.9 461 33.4
Potri.005G098400 Populus trichocarpa HOM05D007554 ORTHO05D009569 1.5e-45 188.0 455 30.8
Cpa.g.sc5.117 Carica papaya HOM05D007554 ORTHO05D009569 1.9e-43 181.0 448 31.7
Ciclev10011754m.g Citrus clementina HOM05D007554 ORTHO05D009569 3.5e-42 176.8 468 31.2
FvH4_6g17340 Fragaria vesca HOM05D007554 ORTHO05D009569 4.6e-42 176.4 442 32.1
Duzib106G2002 Durio zibethinus HOM05D007554 ORTHO05D009569 6.0e-42 176.0 451 30.2
FAN05G0950 Fragaria x ananassa HOM05D000031 ORTHO05D001864 3.9e-41 173.3 439 31.9
Thecc.05G076700 Theobroma cacao HOM05D007554 ORTHO05D009569 1.5e-40 171.4 452 30.5
Manes.09G058083 Manihot esculenta HOM05D007554 ORTHO05D009569 1.2e-39 168.3 440 29.3
GSVIVG01033729001 Vitis vinifera HOM05D007554 ORTHO05D009569 2.1e-39 167.5 447 30.0
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 3.6e-39 166.8 437 31.4
Gohir.D09G139300 Gossypium hirsutum HOM05D007554 ORTHO05D009569 6.2e-39 166.0 461 29.9
Gorai.006G159800 Gossypium raimondii HOM05D007554 ORTHO05D009569 6.2e-39 166.0 461 29.9
QL07p041193 Quercus lobata HOM05D007554 ORTHO05D009569 2.3e-38 164.1 454 29.5
MD12G1101400 Malus domestica HOM05D007554 ORTHO05D009569 4.0e-38 163.3 444 31.8
BcaC02g11783 Brassica carinata HOM05D007554 ORTHO05D009569 5.2e-38 162.9 175 60.6
FAN05G5377 Fragaria x ananassa HOM05D007554 ORTHO05D009569 8.9e-38 162.2 437 30.9
Lj2A125T59 Lonicera japonica HOM05D007554 ORTHO05D009569 1.2e-37 161.8 426 32.9
TWI74G1006 Tripterygium wilfordii HOM05D007554 ORTHO05D009569 1.3e-36 158.3 454 29.7
Peaxi162Scf01063g00111 Petunia axillaris HOM05D007554 ORTHO05D009569 1.7e-36 157.9 460 29.8
TAR623G1240 Trochodendron aralioides HOM05D007554 ORTHO05D009569 1.7e-36 157.9 363 34.2
Glyma.03G188800 Glycine max HOM05D007554 ORTHO05D009569 3.7e-36 156.8 434 30.9
PGR142G2625 Punica granatum HOM05D007554 ORTHO05D009569 6.4e-36 156.0 439 30.5
FAN05G4577 Fragaria x ananassa HOM05D007554 ORTHO05D009569 8.3e-36 155.6 405 31.4
Prupe.7G122100 Prunus persica HOM05D007554 ORTHO05D009569 2.4e-35 154.1 449 28.1
Phvul.001G184200 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 5.4e-35 152.9 457 29.8
CSS0026453 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 7.1e-35 152.5 451 29.7
HanXRQChr06g0181651 Helianthus annuus HOM05D007554 ORTHO05D009569 1.6e-34 151.4 352 33.2
CSS0026822 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 2.1e-34 151.0 451 29.5
Glyma.10G063900 Glycine max HOM05D007554 ORTHO05D009569 4.6e-34 149.8 377 32.1
Glyma.19G189000 Glycine max HOM05D007554 ORTHO05D009569 5.1e-33 146.4 451 29.7
Gohir.A09G143100 Gossypium hirsutum HOM05D007554 ORTHO05D009569 5.1e-33 146.4 447 27.7
Lj5g0018631 Lotus japonicus HOM05D007554 ORTHO05D009569 6.6e-33 146.0 481 27.9
RcHm_v2.0_Chr3g0471481 Rosa chinensis HOM05D007554 ORTHO05D009569 6.6e-33 146.0 434 30.4
Glyma.13G148500 Glycine max HOM05D007554 ORTHO05D009569 1.5e-32 144.8 462 29.4
Eucgr.K02413 Eucalyptus grandis HOM05D007554 ORTHO05D009569 3.3e-32 143.7 462 29.0
Sabra05G0080800 Salix brachista HOM05D007554 ORTHO05D009569 3.3e-32 143.7 469 28.1
Lsat_1_v5_gn_2_24301 Lactuca sativa HOM05D007554 ORTHO05D009569 7.3e-32 142.5 360 32.2
DCAR_015020 Daucus carota HOM05D007554 ORTHO05D009569 9.5e-32 142.1 447 28.2
Medtr1g061840 Medicago truncatula HOM05D007554 ORTHO05D009569 3.6e-31 140.2 456 28.1
arahy.Tifrunner.gnm1.ann1.WUL3RA Arachis hypogaea HOM05D007554 ORTHO05D009569 1.8e-30 137.9 414 29.0
CiPaw.09G006000 Carya illinoinensis HOM05D007554 ORTHO05D009569 2.4e-30 137.5 328 31.7
VMungo0720G0941 Vigna mungo HOM05D007554 ORTHO05D009569 6.8e-30 136.0 436 28.7
arahy.Tifrunner.gnm1.ann1.TQ9G2A Arachis hypogaea HOM05D007554 ORTHO05D009569 8.9e-30 135.6 416 29.3
Lj1g0019279 Lotus japonicus HOM05D007554 ORTHO05D009569 8.9e-30 135.6 439 36.2
vmacro08807 Vaccinium macrocarpon HOM05D007554 ORTHO05D009569 1.5e-29 134.8 452 30.3
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 2.6e-29 134.0 346 32.1
Solyc09g008660.3 Solanum lycopersicum HOM05D007554 ORTHO05D009569 1.7e-28 131.3 334 31.4
PGSC0003DMG401012981 Solanum tuberosum HOM05D007554 ORTHO05D009569 2.9e-28 130.6 330 30.9
Cc06_g04860 Coffea canephora HOM05D007554 ORTHO05D009569 1.4e-27 128.3 446 27.1
Nn2g13923 Nelumbo nucifera HOM05D007554 ORTHO05D009569 4.2e-27 126.7 371 30.7
Phvul.007G225500 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 1.6e-26 124.8 433 28.9
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 2.7e-26 124.0 418 27.8
TPR.G30363 Trifolium pratense HOM05D007554 ORTHO05D009569 3.0e-25 120.6 459 27.2
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 3.9e-25 120.2 242 31.4
Aqoxy2G01532 Aquilegia oxysepala HOM05D007554 ORTHO05D009569 1.1e-24 118.6 450 26.4
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 2.5e-24 117.5 346 26.6
Ah.15g091360 Amaranthus hybridus HOM05D007554 ORTHO05D009569 7.3e-24 115.9 417 25.4
Lalb_Chr01g0018501 Lupinus albus HOM05D007554 ORTHO05D009569 1.6e-23 114.8 410 25.9
AUR62044070 Chenopodium quinoa HOM05D007554 ORTHO05D009569 3.6e-23 113.6 437 25.4
Nitab4.5_0006709g0010 Nicotiana tabacum HOM05D007554 ORTHO05D009569 3.6e-23 113.6 445 24.5
Psat0s3550g0120 Pisum sativum HOM05D007554 ORTHO05D009569 4.7e-23 113.2 418 28.5
VMungo1383G1881 Vigna mungo HOM05D007554 ORTHO05D009569 4.7e-23 113.2 474 25.9
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 1.1e-22 112.1 448 28.8
Dinv35842 Davidia involucrata HOM05D007554 ORTHO05D009569 1.1e-22 112.1 454 27.5
AUR62040182 Chenopodium quinoa HOM05D007554 ORTHO05D009569 4.0e-22 110.2 443 25.5
Nitab4.5_0004281g0070 Nicotiana tabacum HOM05D007554 ORTHO05D009569 3.4e-21 107.1 433 24.7
Sopen09g003460 Solanum pennellii HOM05D007554 ORTHO05D009569 3.4e-21 107.1 333 29.4
EL10Ac7g16728 Beta vulgaris HOM05D007554 ORTHO05D009569 9.9e-21 105.5 429 24.5
arahy.Tifrunner.gnm1.ann1.5H9RXZ Arachis hypogaea HOM05D007554 ORTHO05D009569 8.4e-20 102.4 445 26.1
arahy.Tifrunner.gnm1.ann1.NAN5QV Arachis hypogaea HOM05D007554 ORTHO05D009569 8.4e-20 102.4 445 26.1
Sed0015840 Sechium edule HOM05D000031 ORTHO05D001864 1.1e-19 102.1 254 30.3
Sc07g0004650 Simmondsia chinensis HOM05D007554 ORTHO05D009569 1.1e-19 102.1 434 26.7
Hma1.2p1_1578F.1_g291800 Hydrangea macrophylla HOM05D007554 ORTHO05D009569 3.2e-19 100.5 423 25.8
MELO3C009416.2 Cucumis melo HOM05D007554 ORTHO05D009569 4.6e-18 96.7 259 29.3
CAN.G1830.10 Capsicum annuum HOM05D007554 ORTHO05D009569 1.3e-17 95.1 221 32.6
CsaV3_3G036620 Cucumis sativus L. HOM05D007554 ORTHO05D009569 8.7e-17 92.4 266 28.2
Actinidia31304 Actinidia chinensis HOM05D007554 ORTHO05D009569 7.3e-16 89.4 329 29.2
Haze_19498 Corylus avellana HOM05D000031 ORTHO05D001864 6.2e-15 86.3 254 29.5
PSO339G0406 Papaver somniferum HOM05D007554 ORTHO05D009569 9.0e-14 82.4 164 29.9
PSO801G0154 Papaver somniferum HOM05D007554 ORTHO05D009569 5.8e-13 79.7 438 22.8
Haze_19488 Corylus avellana HOM05D000140 ORTHO05D000087 1.9e-11 74.7 189 30.2
MBI04_g22191_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D009569 7.1e-11 72.8 349 24.9
ClCG10G019580 Citrullus lanatus HOM05D000031 ORTHO05D001864 1.2e-10 72.0 269 25.3
Ca_01174_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 2.7e-10 70.9 242 24.0
VMungo0331G1583 Vigna mungo HOM05D000566 ORTHO05D004798 3.9e-09 67.0 237 25.3
Lsat_1_v5_gn_1_36681 Lactuca sativa HOM05D000566 ORTHO05D004798 6.7e-09 66.2 280 22.5
Phvul.005G164900 Phaseolus vulgaris HOM05D000566 ORTHO05D004798 8.7e-09 65.9 240 22.1
Ca_23280_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 1.1e-08 65.5 238 23.9
TPR.G15135 Trifolium pratense HOM05D000566 ORTHO05D004798 1.1e-08 65.5 246 23.6
VMungo1080G1237 Vigna mungo HOM05D000566 ORTHO05D004798 1.1e-08 65.5 244 23.0
arahy.Tifrunner.gnm1.ann1.561HRF Arachis hypogaea HOM05D000566 ORTHO05D004798 1.9e-08 64.7 237 22.8
MSTRG.22623 Avicennia marina HOM05D000566 ORTHO05D004798 3.3e-08 63.9 223 23.8
Lalb_Chr04g0263011 Lupinus albus HOM05D000566 ORTHO05D004798 3.3e-08 63.9 234 23.9
Rhsim08G0228800 Rhododendron simsii HOM05D000566 ORTHO05D004798 3.3e-08 63.9 240 24.2
Phvul.010G143700 Phaseolus vulgaris HOM05D000566 ORTHO05D004798 9.6e-08 62.4 237 24.1
Lj3g0025101 Lotus japonicus HOM05D000566 ORTHO05D004798 1.3e-07 62.0 237 25.3
Haze_17426 Corylus avellana HOM05D000566 ORTHO05D000686 1.6e-07 61.6 233 26.2
Thecc.06G102300 Theobroma cacao HOM05D000566 ORTHO05D004798 2.1e-07 61.2 283 23.7
TPR.G6520 Trifolium pratense HOM05D000566 ORTHO05D004798 3.7e-07 60.5 283 22.3
C04p11410 Brassica napus HOM05D007554 ORTHO05D009569 4.8e-07 60.1 35 85.7
Medtr2g100630 Medicago truncatula HOM05D000566 ORTHO05D004798 4.8e-07 60.1 245 22.0
vmacro18840 Vaccinium macrocarpon HOM05D000566 ORTHO05D004798 4.8e-07 60.1 244 22.5
Nitab4.5_0001991g0050 Nicotiana tabacum HOM05D000566 ORTHO05D004798 6.2e-07 59.7 251 23.1
TAR622G1185 Trochodendron aralioides HOM05D000566 ORTHO05D000686 6.2e-07 59.7 347 24.5
arahy.Tifrunner.gnm1.ann1.YI8MDQ Arachis hypogaea HOM05D000566 ORTHO05D004798 8.1e-07 59.3 235 23.4
Glyma.13G353200 Glycine max HOM05D000566 ORTHO05D004798 8.1e-07 59.3 236 22.0
Lj9A515T34 Lonicera japonica HOM05D000566 ORTHO05D004798 8.1e-07 59.3 235 22.1
MBI10_g08550_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 8.1e-07 59.3 243 26.3
RcHm_v2.0_Chr2g0141111 Rosa chinensis HOM05D000566 ORTHO05D004798 8.1e-07 59.3 271 24.7
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.1e-06 58.9 273 27.8
ATR0053G016 Amborella trichopoda HOM05D000566 ORTHO05D000686 1.4e-06 58.5 241 26.1
Cfa018643 Carpinus fangiana HOM05D000566 ORTHO05D000686 1.4e-06 58.5 233 25.8
AUR62036291 Chenopodium quinoa HOM05D000566 ORTHO05D000686 1.4e-06 58.5 344 24.7
DCAR_007592 Daucus carota HOM05D000566 ORTHO05D004798 1.4e-06 58.5 230 24.8
Nn4g23703 Nelumbo nucifera HOM05D000566 ORTHO05D000686 1.4e-06 58.5 343 23.3
Hund00707 Selenicereus undatus HOM05D000566 ORTHO05D004798 1.4e-06 58.5 236 24.6
ClCG05G023080 Citrullus lanatus HOM05D000566 ORTHO05D000686 1.8e-06 58.2 267 26.6
Thecc.02G362400 Theobroma cacao HOM05D000566 ORTHO05D000686 1.8e-06 58.2 266 25.2
Gohir.D06G198400 Gossypium hirsutum HOM05D000566 ORTHO05D004798 2.4e-06 57.8 278 25.5
Lsat_1_v5_gn_4_96600 Lactuca sativa HOM05D000566 ORTHO05D004798 2.4e-06 57.8 236 24.2
Medtr8g014900 Medicago truncatula HOM05D000566 ORTHO05D004798 3.1e-06 57.4 295 23.4
Nitab4.5_0000300g0150 Nicotiana tabacum HOM05D000566 ORTHO05D004798 3.1e-06 57.4 251 22.7
Phvul.007G101700 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 3.1e-06 57.4 339 24.2
CSS0004558 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D004798 4.0e-06 57.0 253 20.6
CANSAT56G2153 Cannabis sativa HOM05D000566 ORTHO05D004798 4.0e-06 57.0 239 23.0
AUR62022243 Chenopodium quinoa HOM05D000566 ORTHO05D004798 4.0e-06 57.0 242 22.3
Actinidia21725 Actinidia chinensis HOM05D000566 ORTHO05D004798 5.3e-06 56.6 232 21.1
AUR62031956 Chenopodium quinoa HOM05D000566 ORTHO05D004798 5.3e-06 56.6 243 21.8
ECA247G0904 Erigeron canadensis HOM05D000566 ORTHO05D004798 5.3e-06 56.6 243 23.0
Glyma.15G021100 Glycine max HOM05D000566 ORTHO05D004798 5.3e-06 56.6 236 21.6
HanXRQChr02g0032071 Helianthus annuus HOM05D000566 ORTHO05D004798 5.3e-06 56.6 239 23.4
Lj3A1020T61 Lonicera japonica HOM05D000566 ORTHO05D000686 5.3e-06 56.6 260 25.4
SMO361G0678 Selaginella moellendorffii HOM05D000566 ORTHO05D000686 5.3e-06 56.6 241 25.7
GSVIVG01016952001 Vitis vinifera HOM05D000566 ORTHO05D004798 5.3e-06 56.6 243 23.9
Ciclev10030626m.g Citrus clementina HOM05D000566 ORTHO05D000686 6.9e-06 56.2 268 26.1
COL.COLO4_30537 Corchorus olitorius HOM05D000428 ORTHO05D004798 6.9e-06 56.2 286 21.3
MELO3C024431.2 Cucumis melo HOM05D000566 ORTHO05D004798 6.9e-06 56.2 298 21.5
SMO361G0381 Selaginella moellendorffii HOM05D000566 ORTHO05D000686 6.9e-06 56.2 241 26.1
MELO3C012209.2 Cucumis melo HOM05D000566 ORTHO05D000686 9.0e-06 55.8 271 26.2
CsaV3_5G033910 Cucumis sativus L. HOM05D000566 ORTHO05D000686 9.0e-06 55.8 269 24.9
Dinv37962 Davidia involucrata HOM05D000566 ORTHO05D004798 9.0e-06 55.8 237 22.4
Glyma.02G101100 Glycine max HOM05D000566 ORTHO05D000686 9.0e-06 55.8 275 25.1
Glyma.08G199600 Glycine max HOM05D000566 ORTHO05D004798 9.0e-06 55.8 237 23.2
Gorai.010G231300 Gossypium raimondii HOM05D000566 ORTHO05D004798 9.0e-06 55.8 279 24.4
Sed0020395 Sechium edule HOM05D000566 ORTHO05D000686 9.0e-06 55.8 359 25.6
SEGI_11508 Sequoiadendron giganteum HOM05D000566 ORTHO05D000686 9.0e-06 55.8 233 25.3


User provided reference genes

Program Settings