Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.1e-286 989.2 468 100.0
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 1.1e-283 979.2 468 98.7
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 5.8e-272 940.3 469 95.1
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 5.8e-272 940.3 469 95.1
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 5.5e-270 933.7 475 93.9
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 7.1e-270 933.3 492 90.9
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.2e-269 932.6 493 90.5
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.5e-267 925.6 491 90.6
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 5.0e-255 884.0 465 87.7
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.1e-243 846.3 464 84.3
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 2.4e-241 838.6 444 87.8
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.5e-238 828.6 464 82.8
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 2.0e-235 818.9 466 82.4
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 9.8e-203 710.3 466 70.4
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 2.7e-184 649.0 349 83.4
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 6.4e-178 627.9 463 61.1
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.4e-177 625.9 462 60.6
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.3e-173 613.6 462 59.5
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 3.4e-171 605.5 463 57.5
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.7e-170 603.2 462 60.4
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 1.7e-170 603.2 465 58.7
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 2.9e-170 602.4 462 58.4
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 3.8e-170 602.1 465 57.6
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.1e-169 600.5 467 58.9
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 7.1e-169 597.8 462 60.0
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 9.3e-169 597.4 465 58.9
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 1.6e-168 596.7 461 58.6
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.6e-168 596.7 465 58.7
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.1e-166 590.5 465 57.8
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.1e-166 590.5 460 58.3
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.9e-166 589.7 466 58.4
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 2.8e-165 585.9 465 59.6
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 3.6e-165 585.5 462 57.4
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 6.2e-165 584.7 463 59.6
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.4e-164 582.8 478 55.4
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.0e-164 582.0 476 56.7
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 6.9e-164 581.3 463 57.0
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 6.9e-164 581.3 463 56.4
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.9e-164 581.3 476 57.1
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 6.9e-164 581.3 447 58.6
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 9.0e-164 580.9 463 56.4
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 2.0e-163 579.7 462 57.6
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 4.5e-163 578.6 476 56.5
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 1.7e-162 576.6 458 57.4
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 3.8e-162 575.5 464 55.8
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 8.4e-162 574.3 462 56.9
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 2.4e-161 572.8 434 59.4
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 3.2e-161 572.4 442 59.0
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 3.2e-161 572.4 462 56.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 4.2e-161 572.0 494 54.7
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 9.3e-161 570.9 462 55.2
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 6.0e-160 568.2 461 55.7
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.0e-159 567.4 473 55.4
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 3.9e-159 565.5 463 55.7
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.9e-158 563.1 469 55.9
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.9e-158 563.1 459 56.0
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 1.4e-153 547.0 462 54.1
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 7.9e-152 541.2 475 54.5
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.8e-151 540.0 465 54.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.7e-151 537.7 494 51.0
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.6e-144 516.9 448 54.7
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 1.3e-143 513.8 421 56.5
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 6.9e-140 501.5 410 56.3
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.5e-139 500.4 395 56.2
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 2.0e-139 500.0 418 54.8
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 2.2e-138 496.5 352 62.2
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 3.0e-135 486.1 475 48.8
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 6.7e-135 485.0 345 60.6
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.3e-133 480.7 508 46.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 3.1e-132 476.1 517 46.2
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 5.9e-131 471.9 380 56.6
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 5.0e-130 468.8 580 42.8
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 2.3e-127 459.9 260 81.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.1e-126 457.6 463 48.2
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.0e-126 456.8 541 42.3
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.7e-125 453.8 345 59.1
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 3.1e-124 449.5 452 46.9
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 2.0e-123 446.8 391 51.7
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.1e-121 441.0 382 55.5
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 8.0e-120 434.9 377 55.4
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 2.3e-119 433.3 556 42.3
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.7e-117 427.2 394 51.5
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 4.8e-117 425.6 399 51.1
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.2e-107 394.4 346 52.6
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 8.5e-106 388.3 458 44.5
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.9e-105 387.1 462 45.2
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 3.6e-104 382.9 379 48.0
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-97 360.9 415 43.1
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.9e-84 317.4 420 40.0
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 5.0e-82 309.3 197 66.0
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.2e-80 304.7 459 38.3
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 8.1e-80 302.0 302 49.3
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 3.1e-79 300.1 240 58.8
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.3e-74 284.6 218 57.3
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 5.6e-73 279.3 206 61.7
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.8e-71 274.2 500 35.0
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-71 273.1 259 50.2
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 8.9e-71 271.9 263 49.4
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 2.0e-70 270.8 168 68.5
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 8.6e-66 255.4 293 43.3
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 3.6e-64 250.0 229 53.3
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 8.1e-64 248.8 223 52.9
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 2.1e-59 234.2 135 85.2
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 5.1e-58 229.6 158 62.7
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 5.1e-58 229.6 509 30.8
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 4.3e-57 226.5 158 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.0e-54 217.6 427 31.6
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 3.7e-40 170.2 234 38.9
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.4e-36 158.3 297 32.3
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 9.3e-36 155.6 202 38.1
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 3.0e-34 150.6 245 32.2
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 6.7e-34 149.4 245 32.2
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.6e-32 144.8 90 67.8
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.4e-30 137.1 78 74.4
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 8.4e-29 132.5 389 27.2
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 2.5e-28 131.0 109 66.1
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 5.3e-23 113.2 88 50.0
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 5.9e-22 109.8 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.1e-20 105.5 211 30.8
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.1e-20 105.5 108 44.4
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-20 104.8 73 60.3
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 2.1e-19 101.3 54 88.9
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.0e-18 99.0 226 27.9
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 3.9e-18 97.1 105 48.6
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 3.9e-18 97.1 76 53.9
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 3.7e-16 90.5 67 53.7
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 6.3e-16 89.7 124 37.9
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 4.1e-15 87.0 96 44.8
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 5.3e-15 86.7 111 41.4
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 8.5e-13 79.3 94 44.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 2.7e-11 74.3 83 44.6
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 6.7e-10 69.7 39 71.8


User provided reference genes

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