Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 3.0e-137 491.9 253 100.0
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 2.1e-130 469.2 254 95.3
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 4.0e-118 428.3 255 89.4
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 8.4e-116 420.6 255 87.1
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 4.2e-115 418.3 255 87.5
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 5.6e-112 407.9 258 83.3
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 1.4e-110 403.3 255 83.9
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 1.2e-109 400.2 258 81.8
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.6e-109 399.1 256 81.6
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 3.4e-109 398.7 253 81.4
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.3e-100 370.2 255 77.6
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 1.5e-96 356.7 256 75.0
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 1.6e-95 353.2 261 72.4
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 6.1e-90 334.7 254 70.1
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 7.4e-88 327.8 261 66.7
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 1.6e-87 326.6 265 66.4
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 3.7e-87 325.5 254 66.5
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 3.1e-86 322.4 255 66.7
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 5.3e-86 321.6 267 66.3
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 3.4e-85 318.9 262 65.3
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 5.9e-85 318.2 222 73.0
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 5.9e-85 318.2 263 66.5
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 1.0e-84 317.4 259 66.8
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 1.3e-84 317.0 260 65.4
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 1.3e-84 317.0 264 66.7
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 1.7e-84 316.6 263 65.8
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 2.2e-84 316.2 260 68.1
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 2.2e-84 316.2 181 83.4
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 3.8e-84 315.5 261 65.1
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 6.5e-84 314.7 221 71.9
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 8.5e-84 314.3 253 66.8
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 1.4e-83 313.5 261 65.1
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 1.9e-83 313.2 253 65.2
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 2.5e-83 312.8 249 65.5
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 5.5e-83 311.6 222 70.3
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 7.2e-83 311.2 257 66.1
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 7.2e-83 311.2 196 78.6
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 9.4e-83 310.8 240 68.8
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 1.2e-82 310.5 264 64.4
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 1.2e-82 310.5 245 66.9
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 2.7e-82 309.3 264 63.6
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 2.7e-82 309.3 235 68.5
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 4.6e-82 308.5 178 82.6
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 7.9e-82 307.8 257 63.8
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 1.0e-81 307.4 250 66.0
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 1.0e-81 307.4 261 63.6
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.8e-81 306.6 180 81.1
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 2.3e-81 306.2 260 63.8
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 3.0e-81 305.8 254 65.0
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 8.8e-81 304.3 182 80.2
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 4.4e-80 302.0 259 63.7
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 5.7e-80 301.6 205 71.2
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 7.4e-80 301.2 245 62.9
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 1.3e-79 300.4 267 61.4
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 1.3e-79 300.4 267 61.4
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 3.7e-79 298.9 235 67.2
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 6.3e-79 298.1 187 79.1
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 8.2e-79 297.7 263 62.7
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 8.2e-79 297.7 177 81.9
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 1.1e-78 297.4 252 64.3
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 4.1e-78 295.4 217 69.1
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 6.9e-78 294.7 265 62.6
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 9.1e-78 294.3 256 63.7
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 3.4e-77 292.4 178 79.2
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 1.7e-76 290.0 230 67.0
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 2.9e-76 289.3 219 65.3
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 5.0e-76 288.5 257 61.5
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 6.5e-76 288.1 182 75.8
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 1.1e-75 287.3 299 57.5
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 1.1e-75 287.3 189 74.6
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 7.2e-75 284.6 243 63.8
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 7.2e-75 284.6 263 60.5
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 1.4e-73 280.4 249 61.0
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 2.0e-72 276.6 188 70.7
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 3.3e-72 275.8 275 57.8
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 5.7e-72 275.0 199 67.3
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 7.4e-72 274.6 257 59.9
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.2e-71 273.1 223 65.9
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 6.3e-71 271.6 265 58.1
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 3.5e-69 265.8 153 81.7
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 1.0e-65 254.2 175 69.7
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 3.0e-65 252.7 185 67.0
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 5.2e-65 251.9 188 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 6.7e-65 251.5 245 54.7
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 2.6e-64 249.6 249 56.2
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 2.2e-63 246.5 221 59.7
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 3.7e-63 245.7 213 60.6
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 6.8e-57 224.9 202 60.4
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 8.8e-57 224.6 123 87.8
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.7e-55 220.3 132 78.8
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 2.2e-55 219.9 202 58.9
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 9.8e-48 194.5 137 66.4
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 1.3e-44 184.1 180 53.9
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 2.5e-43 179.9 173 57.8
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 3.3e-43 179.5 146 63.0
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 1.2e-40 171.0 94 83.0
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 2.3e-33 146.7 129 60.5
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 7.0e-30 135.2 75 84.0
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.2e-26 124.4 65 89.2
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 5.1e-20 102.4 56 87.5
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 5.2e-09 65.9 63 49.2


User provided reference genes

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