Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.8e-205 717.6 364 100.0
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 5.3e-196 687.6 364 95.3
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.2e-195 686.4 364 94.5
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-195 686.0 364 94.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.6e-195 685.3 364 94.8
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.5e-195 684.5 364 95.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.0e-194 681.0 364 94.5
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 9.4e-193 676.8 364 94.2
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 5.7e-190 667.5 364 91.5
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.7e-189 664.8 364 89.8
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.4e-187 658.3 364 90.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 9.4e-177 623.6 364 85.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.8e-172 609.4 366 83.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.2e-171 606.7 367 82.6
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.8e-156 556.2 363 75.2
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.9e-154 548.9 363 74.1
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.1e-153 547.0 363 74.7
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.3e-153 545.4 365 72.9
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.2e-153 545.0 363 73.3
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.2e-150 537.0 366 71.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.5e-150 536.6 360 71.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 4.9e-149 531.6 363 71.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 8.3e-149 530.8 360 70.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-148 530.0 361 70.9
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-148 529.6 361 70.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 7.0e-148 527.7 360 70.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 9.2e-148 527.3 362 70.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.2e-147 526.9 360 71.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 2.0e-147 526.2 360 70.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-147 526.2 361 70.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.7e-147 525.8 371 68.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.7e-147 525.8 419 64.0
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.8e-147 524.2 362 68.8
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 5.0e-146 521.5 371 67.9
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 7.3e-145 517.7 362 69.1
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 7.3e-145 517.7 371 68.2
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 9.5e-145 517.3 361 69.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.8e-144 515.8 361 68.7
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.6e-144 515.4 361 68.7
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 8.0e-144 514.2 361 68.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 3.1e-143 512.3 355 68.5
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 6.8e-143 511.1 361 68.4
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.4e-142 508.8 362 68.8
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.7e-141 505.4 363 66.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 4.9e-141 505.0 368 66.8
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.1e-140 503.8 361 67.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.9e-140 503.1 364 67.3
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.4e-140 502.7 360 65.6
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.4e-140 502.7 363 66.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 5.4e-140 501.5 362 68.0
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.7e-139 499.2 367 67.3
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.7e-139 499.2 367 67.3
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.7e-139 499.2 363 66.4
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 3.5e-139 498.8 360 66.7
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 6.0e-139 498.0 356 67.1
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 6.0e-139 498.0 362 67.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.3e-138 496.9 362 64.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.7e-138 496.5 362 64.4
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.7e-138 496.5 349 68.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.3e-138 496.1 362 66.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 3.0e-138 495.7 362 66.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 3.9e-138 495.4 365 66.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 5.0e-138 495.0 362 64.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 8.6e-138 494.2 368 67.7
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 8.6e-138 494.2 373 64.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-137 493.8 356 70.2
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.5e-137 493.4 367 65.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.5e-137 492.7 361 69.3
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.5e-137 490.7 349 68.2
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.1e-136 489.6 393 62.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 8.0e-136 487.6 359 65.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.5e-134 483.4 386 62.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-134 482.6 382 63.1
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.8e-134 481.5 357 66.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 5.8e-134 481.5 359 66.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 7.5e-134 481.1 393 62.8
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-133 479.9 382 62.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.9e-133 479.2 363 65.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.7e-133 478.8 360 64.2
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.7e-133 478.8 361 63.4
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.7e-133 478.8 380 63.4
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 8.3e-133 477.6 359 65.2
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.4e-132 476.1 382 62.0
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.4e-132 474.9 362 64.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 5.1e-130 468.4 322 69.3
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.1e-129 467.2 351 64.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.5e-129 466.8 365 63.8
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 6.8e-127 458.0 357 63.6
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 9.9e-126 454.1 363 61.7
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 6.4e-125 451.4 353 62.6
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.1e-124 448.7 328 66.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.7e-123 446.0 357 62.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 7.8e-123 444.5 320 67.8
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.7e-122 443.4 364 62.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.7e-122 443.4 364 62.1
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.3e-122 443.0 382 59.9
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.9e-121 439.9 316 65.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.3e-121 438.7 360 60.3
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.3e-121 438.7 291 71.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 7.3e-121 438.0 362 62.4
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.2e-120 437.2 364 60.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.4e-119 433.0 363 60.3
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-116 424.1 354 59.6
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.4e-116 422.9 294 71.1
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.1e-115 419.9 298 68.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.8e-112 409.5 296 64.9
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 7.6e-110 401.4 292 66.8
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.9e-108 396.7 382 55.8
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.6e-106 388.3 330 59.4
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.8e-103 380.2 280 66.8
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.6e-97 358.6 286 61.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.6e-96 357.1 365 51.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 6.2e-96 355.1 362 48.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.0e-94 350.1 341 50.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 5.8e-94 348.6 360 51.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.4e-92 344.0 363 51.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 2.5e-92 343.2 361 52.6
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 5.5e-92 342.0 357 52.9
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.1e-92 341.7 362 49.2
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.1e-91 340.1 336 49.7
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.9e-89 333.6 311 52.7
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 7.4e-89 331.6 363 50.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.2e-84 316.2 270 59.3
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.9e-60 237.3 152 74.3
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.5e-57 227.6 329 38.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.9e-46 189.1 135 65.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 5.2e-42 176.0 345 32.5
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.6e-41 173.7 138 68.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 7.5e-41 172.2 105 83.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.5e-38 163.3 146 60.3
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-35 154.8 137 56.9
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 6.1e-35 152.5 337 33.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.6e-30 136.3 80 82.5
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 4.6e-30 136.3 112 62.5
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.6e-29 132.1 85 70.6
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 85 69.4
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.3e-28 129.8 87 67.8
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.6e-28 129.4 86 68.6
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-26 125.2 199 37.2
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.4e-24 115.9 342 26.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-22 111.7 78 65.4
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-22 109.4 77 64.9
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-22 109.4 77 64.9
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-22 109.4 77 64.9
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.0e-22 109.4 78 64.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-21 108.2 77 64.9
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-21 107.8 78 62.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-21 107.8 77 63.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-20 104.8 68 67.6
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-20 104.4 104 52.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-20 104.0 78 59.0
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-19 101.7 104 56.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.3e-18 97.4 87 59.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 7.5e-17 92.4 106 45.3
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 2.2e-16 90.9 106 45.3
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.1e-14 84.3 73 53.4
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.7e-13 81.3 45 84.4
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-13 81.3 58 67.2
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-12 78.6 56 71.4
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-12 78.6 55 69.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.6e-11 73.6 67 59.7
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-10 72.0 86 46.5
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 4.9e-08 63.2 48 62.5
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.4e-07 59.7 47 66.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 2.1e-06 57.8 44 70.5
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.1e-06 57.8 49 49.0
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 3.5e-06 57.0 39 71.8
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 4.6e-06 56.6 49 49.0
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.8e-06 55.8 37 56.8


User provided reference genes

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