Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-222 775.4 404 100.0
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 8.3e-166 587.4 398 81.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.8e-163 578.6 399 81.2
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.9e-162 576.2 398 81.2
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.0e-160 568.9 399 80.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 3.2e-157 558.9 403 78.7
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.0e-147 525.8 411 72.7
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.0e-135 486.5 410 69.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 8.1e-129 464.5 413 67.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 4.0e-128 462.2 412 68.7
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.4e-126 454.5 408 65.2
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-125 454.1 417 67.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 4.6e-124 448.7 413 65.4
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 7.6e-119 431.4 412 64.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.5e-101 373.2 408 57.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.1e-96 355.9 402 54.2
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.6e-95 353.2 422 52.6
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.6e-95 353.2 418 54.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.5e-94 348.6 430 51.2
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 8.5e-86 321.6 432 50.9
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-83 313.9 424 49.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.4e-82 309.3 428 49.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 5.9e-79 298.9 407 50.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.4e-77 294.3 413 49.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.3e-73 281.2 435 43.2
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.7e-70 270.8 441 41.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.5e-69 267.7 372 47.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 4.2e-69 266.2 405 46.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.6e-68 264.2 435 42.3
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.1e-68 262.3 429 42.4
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.1e-68 262.3 410 45.4
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.2e-67 259.2 436 41.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.7e-67 258.8 442 41.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.7e-67 258.8 438 41.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 8.8e-67 258.5 443 43.1
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.0e-66 257.3 420 41.9
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.3e-66 256.5 435 41.1
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-65 254.2 439 41.2
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.2e-63 248.1 435 42.1
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-63 247.7 427 41.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.6e-63 247.7 447 40.5
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.7e-63 246.9 440 40.2
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.5e-63 246.5 443 40.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 5.0e-62 242.7 440 39.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.0e-62 242.7 403 40.7
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.2e-61 240.0 427 41.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.5e-61 239.2 440 38.9
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.7e-60 236.9 421 40.9
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.7e-60 236.1 432 39.4
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.4e-59 234.6 427 40.5
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 5.2e-59 232.6 423 42.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.4e-58 229.6 423 41.1
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.8e-58 228.4 423 39.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.8e-58 228.4 423 39.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.2e-57 227.3 433 40.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 3.7e-57 226.5 438 39.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.8e-57 226.1 410 39.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.8e-57 226.1 423 39.5
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.8e-57 226.1 436 39.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.1e-56 224.9 434 38.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 7.0e-56 222.2 421 39.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-55 221.5 433 37.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.3e-54 218.0 430 39.1
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.3e-54 218.0 449 38.3
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 5.0e-54 216.1 421 38.5
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.6e-54 215.3 424 39.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 4.2e-53 213.0 431 38.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.2e-53 212.2 428 40.0
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.1e-52 210.7 431 36.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.6e-52 209.9 439 38.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 8.0e-52 208.8 422 37.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.0e-51 208.4 418 38.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.0e-51 208.4 427 38.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-51 207.6 426 37.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-51 207.6 434 36.2
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 4.0e-51 206.5 405 38.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.0e-50 204.1 443 36.6
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.0e-50 204.1 434 38.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 5.7e-50 202.6 410 38.3
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.3e-49 201.4 453 36.0
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.7e-49 201.1 426 37.8
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-49 201.1 436 36.9
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.8e-49 200.3 444 35.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 8.3e-49 198.7 430 37.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.1e-48 198.4 424 35.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-48 198.4 456 36.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.4e-48 196.1 428 36.9
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 7.0e-48 195.7 408 37.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 9.2e-48 195.3 429 38.0
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.2e-47 194.9 430 38.1
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.6e-47 194.5 424 36.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.7e-47 193.7 422 38.6
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.7e-47 193.7 435 34.7
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.5e-47 193.4 466 34.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 3.5e-47 193.4 458 36.7
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.5e-47 193.0 433 37.6
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.5e-47 193.0 434 35.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 7.8e-47 192.2 409 36.9
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 7.8e-47 192.2 454 34.4
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.3e-46 191.4 463 33.9
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.3e-46 190.7 427 36.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.9e-46 190.3 445 36.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 5.0e-46 189.5 427 37.0
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.1e-45 188.3 417 37.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.1e-45 188.3 442 36.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.5e-45 187.2 444 34.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 4.7e-44 183.0 445 35.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 6.1e-44 182.6 431 35.0
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 6.1e-44 182.6 426 35.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.0e-43 181.8 448 33.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.0e-43 179.9 432 34.7
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.9e-41 173.7 433 34.2
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.0e-39 166.0 435 34.3
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.8e-39 165.6 454 31.5
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.6e-37 159.5 399 33.8
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.6e-36 157.9 446 33.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.1e-36 157.5 293 37.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-35 154.8 412 33.0
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 6.8e-35 152.5 138 62.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.2e-33 147.5 397 33.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.9e-33 147.1 359 35.4
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 4.9e-33 146.4 415 32.3
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-32 145.2 443 31.2
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.4e-32 144.8 396 33.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 5.4e-32 142.9 385 34.3
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.0e-32 142.5 420 32.6
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 9.2e-32 142.1 422 32.2
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.6e-30 136.0 427 30.2
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.1e-29 135.2 448 31.5
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.5e-29 134.8 410 32.7
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.3e-29 133.3 323 34.7
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 5.6e-29 132.9 408 31.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 7.3e-29 132.5 410 32.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.0e-26 124.4 270 38.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.4e-26 123.2 115 59.1
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 7.5e-26 122.5 420 29.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.3e-25 121.7 410 30.5
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.7e-22 111.3 384 29.9
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.7e-22 111.3 369 30.1
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.3e-22 110.9 124 50.0
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.1e-21 108.6 295 33.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.3e-21 107.1 366 31.7
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 4.7e-20 103.2 140 44.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 8.1e-20 102.4 50 100.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-19 102.1 140 44.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.4e-19 101.7 469 27.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.2e-16 90.5 183 36.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.2e-16 90.1 282 31.2
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 5.4e-16 89.7 415 28.4
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.2e-16 89.0 163 36.2
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-15 88.6 151 39.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-15 88.2 295 30.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.7e-15 87.4 179 30.7
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 5.1e-14 83.2 283 30.7
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.1e-14 83.2 285 30.2
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.6e-14 82.8 305 28.9
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 8.7e-14 82.4 208 32.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.5e-13 81.6 309 31.1
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.6e-13 79.7 376 26.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.2e-12 78.6 100 46.0
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 8.1e-12 75.9 69 52.2
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-11 75.1 297 27.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.4e-11 75.1 49 71.4
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.2e-10 72.0 226 28.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.2e-09 67.8 320 25.0
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.9e-09 67.4 133 36.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.9e-09 67.4 197 30.5
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.4e-09 66.2 107 43.0
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.4e-09 66.2 94 38.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 6.0e-07 59.7 114 31.6
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.9e-06 57.0 374 25.4
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.1e-06 56.6 102 34.3


User provided reference genes

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