Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09207 Brassica carinata HOM05D008043 ORTHO05D010395 6.0e-121 437.6 227 100.0
C04p09330 Brassica napus HOM05D008043 ORTHO05D010395 8.4e-67 257.7 262 61.8
BolC4t22503H Brassica oleracea HOM05D008043 ORTHO05D010395 1.8e-61 240.0 264 58.0
C04p09280 Brassica napus HOM05D008043 ORTHO05D010395 5.9e-60 235.0 263 56.7
BolC4t22514H Brassica oleracea HOM05D008043 ORTHO05D010395 1.6e-57 226.9 264 56.1
BcaC02g11993 Brassica carinata HOM05D008043 ORTHO05D010395 6.1e-57 224.9 264 56.1
BcaC02g11982 Brassica carinata HOM05D008043 ORTHO05D010395 6.7e-56 221.5 263 56.7
BolC4t22531H Brassica oleracea HOM05D008043 ORTHO05D010395 6.7e-56 221.5 263 56.7
BcaC02g11981 Brassica carinata HOM05D008043 ORTHO05D010395 2.0e-55 219.9 256 55.1
BcaB02g09206 Brassica carinata HOM05D008043 ORTHO05D010395 4.1e-53 212.2 277 50.9
BcaC02g11979 Brassica carinata HOM05D008043 ORTHO05D010395 6.7e-48 194.9 263 53.2
BolC4t22534H Brassica oleracea HOM05D008043 ORTHO05D010395 4.8e-46 188.7 234 54.3
BraA05t19738Z Brassica rapa HOM05D008043 ORTHO05D010395 1.4e-45 187.2 231 54.5
A05p07710 Brassica napus HOM05D008043 ORTHO05D010395 1.8e-45 186.8 232 54.3
C04p09250 Brassica napus HOM05D008043 ORTHO05D010395 9.1e-45 184.5 229 55.5
BolC4t22502H Brassica oleracea HOM05D008043 ORTHO05D010395 6.5e-43 178.3 230 53.5
C04p09090 Brassica napus HOM05D008043 ORTHO05D010395 1.9e-34 150.2 214 50.9
C04p09260 Brassica napus HOM05D008043 ORTHO05D010395 3.0e-24 116.3 87 77.0
BcaB02g09171 Brassica carinata HOM05D008043 ORTHO05D010395 1.1e-21 107.8 117 53.0
AL8G34510 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 1.0e-19 101.3 224 34.4
Thhalv10015531m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 2.3e-16 90.1 111 42.3
BcaB05g22710 Brassica carinata HOM05D008043 ORTHO05D010395 4.0e-16 89.4 111 43.2
Carub.0006s2942 Capsella rubella HOM05D008043 ORTHO05D010395 4.0e-16 89.4 140 37.1
BcaC01g00257 Brassica carinata HOM05D008043 ORTHO05D010395 5.7e-15 85.5 127 39.4
A08p23990 Brassica napus HOM05D008043 ORTHO05D010395 5.7e-15 85.5 127 39.4
C03p77350 Brassica napus HOM05D008043 ORTHO05D010395 5.7e-15 85.5 127 39.4
BolC3t19988H Brassica oleracea HOM05D008043 ORTHO05D010395 5.7e-15 85.5 127 39.4
BraA08t34356Z Brassica rapa HOM05D008043 ORTHO05D010395 5.7e-15 85.5 127 39.4
Thhalv10014402m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 5.7e-15 85.5 159 36.5
BraA02t05677Z Brassica rapa HOM05D008043 ORTHO05D010395 7.5e-15 85.1 111 42.3
BNapus_Darmor_BZH_scaffold_38p00490 Brassica napus HOM05D008043 ORTHO05D010395 2.2e-14 83.6 111 41.4
BcaC03g13905 Brassica carinata HOM05D001688 ORTHO05D010395 2.9e-14 83.2 111 41.4
C02p11120 Brassica napus HOM05D008043 ORTHO05D010395 2.9e-14 83.2 111 41.4
BolC2t07184H Brassica oleracea HOM05D008043 ORTHO05D010395 2.9e-14 83.2 111 41.4
Thhalv10015284m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 3.7e-14 82.8 91 45.1
Aa31LG8G14450 Aethionema arabicum HOM05D008043 ORTHO05D010395 6.4e-14 82.0 122 38.5
AL132U10010 Arabidopsis lyrata HOM05D008043 ORTHO05D031374 1.8e-13 80.5 122 39.3
Aa31LG8G14460 Aethionema arabicum HOM05D008043 ORTHO05D010395 1.2e-12 77.8 124 37.9
Aa31LG8G14480 Aethionema arabicum HOM05D008043 ORTHO05D010395 1.6e-12 77.4 111 40.5
Sp7g36960 Schrenkiella parvula HOM05D008043 ORTHO05D010395 3.5e-12 76.3 153 32.7
AL7G25500 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 7.8e-12 75.1 57 57.9
BcaNung06005 Brassica carinata HOM05D008043 ORTHO05D010395 1.0e-11 74.7 120 35.8
BolC4t22516H Brassica oleracea HOM05D008043 ORTHO05D010395 3.0e-11 73.2 54 70.4
Thhalv10026891m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 5.0e-11 72.4 59 54.2
Carub.0008s1892 Capsella rubella HOM05D008043 ORTHO05D010395 6.6e-11 72.0 88 43.2
AL8G34460 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 1.1e-10 71.2 123 38.2
BcaC05g27059 Brassica carinata HOM05D008043 ORTHO05D010395 1.1e-10 71.2 131 31.3
A03p51150 Brassica napus HOM05D008043 ORTHO05D010395 1.1e-10 71.2 111 35.1
C05p29170 Brassica napus HOM05D008043 ORTHO05D010395 1.1e-10 71.2 131 31.3
BcaB03g12228 Brassica carinata HOM05D008043 ORTHO05D010395 1.5e-10 70.9 63 50.8
Carub.0005s0862 Capsella rubella HOM05D008043 ORTHO05D031374 5.6e-10 68.9 126 33.3
A09p36190 Brassica napus HOM05D008043 ORTHO05D010395 9.5e-10 68.2 131 30.5
BolC5t31648H Brassica oleracea HOM05D008043 ORTHO05D010395 1.6e-09 67.4 113 33.6
BraA09t39144Z Brassica rapa HOM05D008043 ORTHO05D010395 1.6e-09 67.4 109 33.9
Carub.0006s3662 Capsella rubella HOM05D008043 ORTHO05D031374 1.6e-09 67.4 126 33.3
AL8G33140 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 2.8e-09 66.6 90 46.7
BcaNung05674 Brassica carinata HOM05D008043 ORTHO05D010395 3.6e-09 66.2 91 39.6
AT1G73490 Arabidopsis thaliana HOM05D008043 ORTHO05D010395 6.2e-09 65.5 63 50.8
Thhalv10027509m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 8.0e-09 65.1 59 54.2
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 1.2e-07 61.2 47 57.4
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 2.0e-07 60.5 55 50.9
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 4.4e-07 59.3 73 45.2
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 5.8e-07 58.9 53 49.1
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 7.5e-07 58.5 62 48.4
Potri.005G093100 Populus trichocarpa HOM05D002658 ORTHO05D003000 7.5e-07 58.5 57 47.4
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 1.3e-06 57.8 81 37.0
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.3e-06 57.8 47 55.3
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 1.3e-06 57.8 69 44.9
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 1.3e-06 57.8 48 50.0
Zm00001eb171320 Zea mays HOM05D002658 ORTHO05D003000 1.3e-06 57.8 57 49.1
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.7e-06 57.4 47 55.3
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.7e-06 57.4 47 59.6
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 1.7e-06 57.4 65 46.2
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.7e-06 57.4 65 46.2
MBI18_g11231_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 1.7e-06 57.4 72 41.7
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 2.2e-06 57.0 47 53.2
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 2.2e-06 57.0 47 53.2
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 2.2e-06 57.0 57 50.9
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 2.9e-06 56.6 61 44.3
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 2.9e-06 56.6 61 44.3
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 2.9e-06 56.6 61 44.3
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 2.9e-06 56.6 47 53.2
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 2.9e-06 56.6 83 38.6
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 2.9e-06 56.6 73 37.0
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 2.9e-06 56.6 70 45.7
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 2.9e-06 56.6 49 53.1
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 2.9e-06 56.6 57 47.4
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 3.7e-06 56.2 92 34.8
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 3.7e-06 56.2 54 46.3
Carub.0008s1890 Capsella rubella HOM05D008043 ORTHO05D010395 3.7e-06 56.2 38 63.2
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 3.7e-06 56.2 49 51.0
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 3.7e-06 56.2 63 44.4
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 3.7e-06 56.2 50 48.0
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 3.7e-06 56.2 57 47.4
Carub.0002s2014 Capsella rubella HOM05D008043 ORTHO05D010395 4.9e-06 55.8 42 61.9
Carub.0002s2022 Capsella rubella HOM05D008043 ORTHO05D010395 4.9e-06 55.8 42 61.9
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 6.4e-06 55.5 49 51.0
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 6.4e-06 55.5 53 49.1
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 6.4e-06 55.5 47 55.3
Actinidia04307 Actinidia chinensis HOM05D002658 ORTHO05D003000 8.3e-06 55.1 64 39.1
MD16G1001600 Malus domestica HOM05D002658 ORTHO05D003000 8.3e-06 55.1 65 44.6
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 8.3e-06 55.1 43 55.8


User provided reference genes

Program Settings