Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 5.9e-89 330.9 170 100.0
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.9e-87 325.9 170 98.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 3.5e-73 278.5 174 84.5
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-71 273.1 174 82.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.5e-71 273.1 174 82.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.5e-71 273.1 174 82.2
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.6e-70 269.6 174 82.2
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.3e-69 265.8 204 71.6
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.4e-68 261.9 171 80.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 9.8e-68 260.4 174 79.9
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.8e-67 258.8 171 79.5
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 3.7e-67 258.5 170 81.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.0e-61 240.4 175 73.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-59 233.4 174 76.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.3e-59 231.1 172 70.9
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.2e-57 226.9 155 74.8
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-57 225.7 179 67.0
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.0e-56 223.8 172 68.0
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.3e-56 223.4 171 70.2
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.8e-56 221.9 171 69.6
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.1e-55 220.3 172 66.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.5e-55 219.2 172 66.3
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 7.3e-55 217.6 170 67.6
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 9.5e-55 217.2 171 66.1
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 9.5e-55 217.2 171 66.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-54 216.5 171 66.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-54 216.1 171 66.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.1e-54 216.1 170 66.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.8e-54 215.7 172 66.9
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.8e-54 215.7 171 66.1
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.6e-54 215.3 171 66.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.6e-54 215.3 172 66.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 3.6e-54 215.3 171 66.1
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.6e-54 215.3 172 64.5
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 4.7e-54 214.9 171 65.5
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.7e-54 214.9 171 66.1
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 66.1
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 6.1e-54 214.5 171 66.7
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 8.0e-54 214.2 168 67.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 8.0e-54 214.2 171 66.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 8.0e-54 214.2 171 65.5
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 8.0e-54 214.2 170 64.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.0e-53 213.8 170 65.3
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.4e-53 213.4 173 66.5
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.4e-53 213.4 172 64.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-53 213.0 170 65.9
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.8e-53 213.0 170 65.9
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.3e-53 212.6 171 66.1
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.3e-53 212.6 172 65.1
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.3e-53 212.6 172 65.1
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.0e-53 212.2 171 64.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 3.0e-53 212.2 170 65.3
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 3.0e-53 212.2 171 65.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 3.0e-53 212.2 172 65.7
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 4.0e-53 211.8 171 65.5
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.2e-53 211.5 171 63.7
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 5.2e-53 211.5 172 65.1
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 5.2e-53 211.5 171 66.1
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 64.3
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 65.5
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 65.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.8e-53 211.1 171 66.1
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.5e-52 209.9 171 62.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.5e-52 209.9 171 62.6
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.5e-52 209.9 172 63.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.0e-52 209.5 171 64.9
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.6e-52 209.1 170 64.7
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.6e-52 209.1 172 64.5
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.6e-52 209.1 171 64.9
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.4e-52 208.8 171 63.2
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.4e-52 208.8 171 66.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.4e-52 208.8 171 66.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.4e-52 208.8 172 64.5
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.4e-52 208.4 171 64.9
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 5.7e-52 208.0 171 64.9
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.7e-52 208.0 172 65.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 7.5e-52 207.6 171 64.3
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 7.5e-52 207.6 171 65.5
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 9.8e-52 207.2 169 65.7
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.3e-51 206.8 172 63.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.7e-51 206.5 171 64.9
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.7e-51 206.5 171 63.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.9e-51 205.7 171 62.6
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.7e-51 205.3 170 64.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 4.9e-51 204.9 171 63.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 8.3e-51 204.1 171 63.2
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 8.3e-51 204.1 170 64.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.1e-50 203.8 172 62.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.8e-50 203.0 172 62.2
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 3.2e-50 202.2 171 63.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.1e-50 201.8 171 63.7
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 5.4e-50 201.4 171 63.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.2e-49 200.3 171 63.7
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 3.5e-49 198.7 171 60.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 7.8e-49 197.6 172 61.6
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.0e-48 197.2 171 63.2
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.0e-48 197.2 175 61.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.0e-48 197.2 175 61.1
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-48 196.8 105 97.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.3e-48 196.8 171 63.2
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 3.9e-48 195.3 188 58.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.0e-45 187.2 171 56.1
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 3.4e-44 182.2 171 54.4
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 4.9e-43 178.3 171 55.0
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 5.4e-42 174.9 171 53.2
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.2e-38 163.7 276 40.2
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.6e-38 163.3 136 65.4
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.0e-32 144.1 96 78.1
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.3e-32 142.9 96 78.1
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-32 141.7 117 66.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.1e-32 141.7 98 73.5
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 8.6e-32 141.0 96 76.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-31 140.6 121 66.1
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-31 140.6 104 73.1
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-31 140.2 104 75.0
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.5e-31 140.2 96 77.1
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-31 139.4 105 74.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.5e-31 139.4 96 72.9
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-31 138.3 104 73.1
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-31 138.3 104 73.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.1e-30 136.3 122 56.6
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-29 134.0 102 73.5
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.4e-29 133.7 95 74.7
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-29 132.9 127 60.6
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-29 132.5 96 75.0
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-28 128.6 98 72.4
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.8e-28 128.3 100 67.0
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 9.9e-28 127.5 96 71.9
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.9e-27 125.9 75 88.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 6.4e-27 124.8 97 64.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-26 123.6 92 73.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-24 115.2 104 64.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-22 110.2 72 80.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-22 109.8 71 80.3
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.0e-20 103.2 69 72.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 2.6e-20 102.8 68 76.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-19 100.5 121 52.9
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-19 100.5 121 52.9
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.4e-18 96.3 88 58.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.3e-18 94.4 65 75.4
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 9.3e-18 94.4 69 71.0
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.0e-16 90.9 189 32.8
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-14 84.0 62 72.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-14 83.2 57 77.2
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.0e-12 76.6 62 59.7
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-07 60.8 64 56.2
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-07 59.7 44 75.0


User provided reference genes

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