Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 4.0e-99 364.8 184 100.0
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 3.4e-58 228.8 118 100.0
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 7.6e-58 227.6 118 99.2
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 7.6e-58 227.6 118 99.2
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 7.6e-58 227.6 118 99.2
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 6.4e-57 224.6 118 98.3
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 6.4e-57 224.6 118 98.3
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 1.9e-48 196.4 121 86.8
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 2.4e-48 196.1 121 86.0
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 5.4e-48 194.9 121 86.8
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 1.6e-47 193.4 121 85.1
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 3.5e-47 192.2 121 85.1
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 1.0e-46 190.7 121 84.3
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 2.1e-44 183.0 121 82.6
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 1.1e-43 180.6 152 73.0
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 1.1e-43 180.6 121 81.8
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 1.1e-43 180.6 121 81.8
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 1.1e-43 180.6 121 81.8
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 1.4e-43 180.3 121 81.0
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 2.4e-43 179.5 122 83.6
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 9.0e-43 177.6 121 79.3
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 9.3e-40 167.5 122 72.1
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 1.0e-25 120.9 122 56.6
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 8.5e-25 117.9 200 39.5
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 7.2e-24 114.8 116 54.3
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 6.1e-23 111.7 127 50.4
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 1.4e-22 110.5 119 52.1
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 8.8e-22 107.8 116 52.6
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 8.8e-22 107.8 117 49.6
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 2.0e-21 106.7 150 47.3
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 2.0e-21 106.7 117 51.3
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 2.0e-21 106.7 116 50.9
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 2.5e-21 106.3 116 50.9
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 2.5e-21 106.3 117 48.7
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 4.3e-21 105.5 117 48.7
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 5.7e-21 105.1 111 51.4
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 1.7e-20 103.6 119 52.1
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 2.8e-20 102.8 116 49.1
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 2.8e-20 102.8 118 51.7
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 4.8e-20 102.1 118 47.5
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 8.2e-20 101.3 106 54.7
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 8.2e-20 101.3 128 46.1
CiPaw.09G219500 Carya illinoinensis HOM05D006353 ORTHO05D007993 1.1e-19 100.9 135 48.1
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 1.1e-19 100.9 118 50.0
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 1.4e-19 100.5 116 49.1
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 2.4e-19 99.8 117 47.0
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 3.1e-19 99.4 119 45.4
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 4.1e-19 99.0 122 50.8
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 4.1e-19 99.0 111 50.5
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 9.1e-19 97.8 109 52.3
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 9.1e-19 97.8 166 39.2
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 1.5e-18 97.1 118 43.2
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 2.0e-18 96.7 183 38.8
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 2.0e-18 96.7 127 45.7
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 2.0e-18 96.7 123 43.9
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 2.6e-18 96.3 123 43.9
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 4.5e-18 95.5 122 47.5
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 4.5e-18 95.5 116 45.7
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 4.5e-18 95.5 116 45.7
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 7.7e-18 94.7 159 42.1
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 1.0e-17 94.4 140 42.9
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 1.7e-17 93.6 130 43.1
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 6.5e-17 91.7 118 46.6
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 1.1e-16 90.9 121 43.0
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 1.1e-16 90.9 114 47.4
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 2.5e-16 89.7 129 45.7
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 3.2e-16 89.4 100 48.0
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 4.2e-16 89.0 116 45.7
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 4.2e-16 89.0 116 45.7
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 1.2e-15 87.4 109 48.6
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 1.2e-15 87.4 109 48.6
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 1.2e-15 87.4 100 49.0
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 1.6e-15 87.0 118 44.1
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 2.1e-15 86.7 98 50.0
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 2.1e-15 86.7 147 41.5
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 2.1e-15 86.7 117 44.4
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.1e-15 86.7 117 44.4
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 3.6e-15 85.9 119 46.2
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 4.7e-15 85.5 128 43.0
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 4.7e-15 85.5 117 44.4
Peaxi162Scf00732g00043 Petunia axillaris HOM05D006353 ORTHO05D007993 4.7e-15 85.5 110 44.5
Nitab4.5_0003003g0010 Nicotiana tabacum HOM05D006353 ORTHO05D007993 7.9e-15 84.7 122 42.6
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 1.0e-14 84.3 100 41.0
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.8e-14 83.6 117 43.6
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.8e-14 83.6 117 43.6
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 1.8e-14 83.6 134 41.8
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 2.3e-14 83.2 113 40.7
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 3.0e-14 82.8 110 40.0
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 1.1e-13 80.9 128 41.4
SGA_v2.0_scaffold85G26642 Striga asiatica HOM05D006353 ORTHO05D007993 2.0e-13 80.1 118 41.5
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.4e-13 79.0 117 41.0
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 9.7e-13 77.8 104 44.2
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 1.1e-11 74.3 114 39.5
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 1.4e-11 73.9 131 37.4
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 1.4e-11 73.9 131 37.4
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.8e-11 73.6 82 48.8
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 2.4e-11 73.2 118 42.4
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 2.4e-11 73.2 118 42.4
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 5.3e-11 72.0 137 34.3
CsaV3_4G027090 Cucumis sativus L. HOM05D006353 ORTHO05D007993 1.6e-10 70.5 117 38.5
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 2.0e-10 70.1 103 38.8
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.3e-09 67.4 137 33.6
Hma1.2p1_1052F.1_g252320 Hydrangea macrophylla HOM05D006353 ORTHO05D007993 2.9e-09 66.2 143 34.3
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 2.9e-09 66.2 136 32.4
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 5.0e-09 65.5 175 33.1
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 6.5e-09 65.1 121 35.5
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.5e-08 63.9 103 39.8
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.5e-08 63.9 103 40.8
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 1.9e-08 63.5 136 33.1
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.5e-08 63.2 110 36.4
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 3.2e-08 62.8 96 39.6
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 7.2e-08 61.6 110 34.5
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.6e-07 60.5 136 34.6
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 2.1e-07 60.1 96 35.4
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 2.7e-07 59.7 95 36.8
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 6.1e-07 58.5 102 33.3
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 8.0e-07 58.2 103 35.9
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 8.0e-07 58.2 91 39.6
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 8.0e-07 58.2 91 39.6
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 8.0e-07 58.2 102 32.4
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 1.0e-06 57.8 99 33.3
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 1.0e-06 57.8 91 38.5
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 1.4e-06 57.4 109 33.9
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.4e-06 57.4 116 30.2
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 1.4e-06 57.4 100 37.0
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 1.4e-06 57.4 95 34.7
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 1.8e-06 57.0 102 32.4
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.8e-06 57.0 102 32.4
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 1.8e-06 57.0 139 29.5
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.8e-06 57.0 110 31.8
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 1.8e-06 57.0 110 34.5
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 1.8e-06 57.0 159 30.8
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 2.3e-06 56.6 97 33.0
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 3.0e-06 56.2 95 33.7
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 3.0e-06 56.2 101 35.6
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 4.0e-06 55.8 121 36.4
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 4.0e-06 55.8 97 34.0
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 5.2e-06 55.5 108 32.4
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 5.2e-06 55.5 109 32.1
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 6.7e-06 55.1 97 34.0
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.7e-06 55.1 95 32.6
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 6.7e-06 55.1 98 31.6
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 6.7e-06 55.1 114 33.3


User provided reference genes

Program Settings