Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 5.1e-307 1057.0 559 100.0
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 2.6e-303 1044.6 560 98.8
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 2.6e-303 1044.6 560 98.8
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 2.5e-298 1028.1 559 97.0
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 6.3e-297 1023.5 560 96.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.8e-296 1021.9 559 96.8
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 5.9e-295 1016.9 559 95.3
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 5.9e-287 990.3 560 93.0
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 7.7e-287 989.9 559 93.7
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.9e-286 988.0 559 93.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.5e-279 965.7 530 94.5
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.2e-276 956.1 559 91.1
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.3e-274 948.0 559 87.7
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 4.7e-268 927.5 574 85.7
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.1e-235 820.1 561 75.9
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 6.8e-235 817.4 562 75.1
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 3.4e-234 815.1 562 74.6
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.2e-233 812.4 562 74.7
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.9e-232 809.3 562 76.0
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 7.0e-232 807.4 561 76.1
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.3e-230 803.1 563 74.8
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 5.0e-230 801.2 600 71.0
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 5.0e-230 801.2 561 74.3
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.9e-229 799.3 562 73.8
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 3.3e-229 798.5 562 73.8
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 7.3e-229 797.3 561 74.2
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.2e-228 796.6 561 73.8
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 3.6e-228 795.0 562 76.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.1e-227 793.5 561 72.5
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.2e-226 790.0 561 73.6
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 4.4e-226 788.1 560 72.9
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.1e-224 783.5 562 72.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.9e-224 782.7 561 71.8
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 4.6e-223 778.1 561 72.2
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.3e-222 776.5 561 72.7
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.3e-222 776.5 561 73.1
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.3e-222 775.8 562 71.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.3e-222 775.8 562 71.2
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 2.3e-222 775.8 561 72.7
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 3.0e-222 775.4 560 73.8
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.0e-222 775.4 562 71.7
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 5.1e-222 774.6 561 71.7
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.5e-221 773.1 561 71.8
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.9e-221 772.7 562 74.0
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 2.5e-221 772.3 561 72.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 7.3e-221 770.8 562 72.2
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 5.2e-219 764.6 563 71.6
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 8.9e-219 763.8 561 70.9
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.0e-218 762.7 562 71.4
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 4.4e-218 761.5 562 71.7
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 4.4e-218 761.5 562 69.6
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 7.6e-218 760.8 561 70.6
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 2.9e-217 758.8 626 65.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 3.2e-216 755.4 562 70.5
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 4.1e-216 755.0 515 75.9
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.2e-215 753.4 562 71.2
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.7e-214 749.6 558 70.3
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.7e-214 749.6 560 70.0
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.9e-214 748.4 565 71.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.3e-213 745.0 557 71.6
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.2e-212 743.4 561 68.8
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.1e-211 740.3 560 71.4
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 6.9e-211 737.6 576 69.6
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 9.0e-211 737.3 562 68.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.2e-210 736.9 562 71.4
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.9e-208 729.6 560 68.6
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.4e-208 729.2 562 70.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 4.2e-208 728.4 561 67.4
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 4.2e-208 728.4 561 67.4
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.0e-206 723.8 563 67.9
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 3.6e-204 715.3 562 68.7
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 6.2e-204 714.5 613 64.1
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 8.1e-204 714.1 555 67.0
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 8.1e-204 714.1 542 71.4
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 2.6e-202 709.1 513 71.9
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 4.5e-202 708.4 565 66.2
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 4.5e-202 708.4 561 67.0
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 2.4e-200 702.6 566 66.3
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.6e-199 699.9 512 71.1
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 2.3e-198 696.0 562 65.1
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.3e-197 692.2 576 65.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.3e-197 691.8 526 75.7
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 7.4e-197 691.0 642 59.7
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.4e-195 686.8 562 62.1
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 6.9e-195 684.5 562 64.8
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 2.2e-193 679.5 515 69.9
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 5.5e-192 674.9 562 64.2
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 7.1e-192 674.5 546 65.9
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 6.9e-187 657.9 533 66.4
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.5e-170 603.6 470 66.4
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 4.5e-170 602.1 595 58.5
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 4.2e-168 595.5 562 56.9
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.6e-167 592.4 393 76.1
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.3e-166 589.7 563 55.8
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 4.5e-162 575.5 455 65.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 4.7e-159 565.5 433 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 3.0e-158 562.8 563 52.6
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 1.5e-157 560.5 569 52.5
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.8e-150 537.0 569 50.4
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.0e-145 521.2 553 53.7
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.6e-135 487.3 339 74.3
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 3.7e-132 476.1 382 65.2
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 3.6e-127 459.5 306 79.1
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.1e-123 448.0 349 67.9
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 6.0e-106 389.0 356 56.2
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 3.4e-101 373.2 341 60.4
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.7e-84 317.8 260 61.5
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 5.1e-81 306.2 545 36.9
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 3.2e-67 260.4 208 66.3
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.5e-61 240.0 198 66.7
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 6.1e-58 229.6 198 61.1
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 6.7e-57 226.1 141 75.9
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.2e-55 219.2 183 59.0
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.3e-49 201.1 130 76.9
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.1e-43 182.2 130 79.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 9.4e-43 179.1 180 61.7
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 3.0e-41 174.1 178 60.7
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 7.0e-38 162.9 158 63.3
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 7.0e-38 162.9 158 63.3
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 7.2e-35 152.9 159 60.4
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 3.6e-34 150.6 161 53.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-28 132.1 85 77.6
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-27 128.3 90 65.6
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 1.3e-23 115.5 77 70.1
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.2e-23 114.8 58 96.6
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-20 105.5 74 68.9
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 4.0e-17 94.0 87 63.2
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.5e-16 92.0 85 60.0
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.8e-08 63.5 74 47.3
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.9e-07 61.2 47 55.3
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 5.4e-06 57.0 156 23.1


User provided reference genes

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