Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.4e-92 341.3 173 100.0
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 8.9e-85 317.0 171 94.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 8.9e-85 317.0 171 94.2
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-84 315.8 173 93.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 4.4e-84 314.7 171 93.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.4e-84 314.7 173 92.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.9e-79 299.3 168 90.5
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.3e-79 297.4 173 87.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.2e-78 294.3 173 86.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.0e-77 291.6 167 89.2
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.9e-77 290.8 169 87.0
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.4e-76 288.1 173 85.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-75 286.6 171 87.1
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.2e-74 282.0 175 84.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.6e-70 269.6 169 81.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 4.8e-70 268.1 169 82.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 4.8e-70 268.1 169 82.8
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.2e-70 267.7 173 79.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-69 265.8 175 81.7
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.4e-66 254.6 163 81.6
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.7e-59 233.0 170 74.7
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.9e-59 231.5 118 99.2
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.2e-54 214.5 169 65.1
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-53 213.8 131 82.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.4e-53 212.6 169 63.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 5.3e-53 211.5 169 63.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 9.0e-53 210.7 167 64.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 9.0e-53 210.7 169 63.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.2e-52 210.3 167 65.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.5e-52 209.9 169 63.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 2.0e-52 209.5 168 64.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.6e-52 209.1 169 64.5
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.5e-52 208.4 167 65.3
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.8e-52 208.0 168 64.3
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 7.6e-52 207.6 169 63.9
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 7.6e-52 207.6 166 64.5
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 7.6e-52 207.6 167 64.7
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.0e-51 207.2 167 63.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.9e-51 205.7 170 62.4
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 5.0e-51 204.9 168 63.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 6.5e-51 204.5 169 63.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 8.4e-51 204.1 169 62.1
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 63.5
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 62.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.4e-50 203.4 167 64.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.5e-50 202.6 167 62.3
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.5e-50 202.6 166 63.3
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.5e-50 202.6 169 63.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.5e-50 202.6 167 62.9
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.2e-50 202.2 170 61.8
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.2e-49 200.3 168 61.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.2e-49 200.3 170 60.0
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.6e-49 199.9 167 62.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.1e-49 199.5 168 62.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.1e-49 199.5 172 58.1
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-49 198.7 167 63.5
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.6e-49 198.4 167 62.3
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.1e-49 198.0 167 62.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 6.1e-49 198.0 167 61.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.9e-49 197.6 168 60.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.8e-48 196.4 168 63.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.8e-48 196.4 169 59.8
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.8e-48 196.4 168 58.9
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.7e-48 194.5 168 60.1
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.7e-48 194.5 168 61.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.7e-48 194.1 171 60.2
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-47 193.7 168 60.1
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 171 60.2
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.1e-47 193.7 171 59.6
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-47 193.0 166 60.8
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.5e-47 192.6 167 59.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 4.3e-47 191.8 166 60.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.7e-47 191.4 166 60.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 7.4e-47 191.0 127 74.0
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 9.7e-47 190.7 166 60.8
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.3e-46 190.3 166 58.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.6e-46 189.9 166 59.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.8e-46 189.1 167 59.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.8e-46 189.1 169 59.2
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.8e-46 189.1 168 58.9
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 4.8e-46 188.3 166 57.8
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 4.8e-46 188.3 166 59.6
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 8.2e-46 187.6 166 59.6
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.2e-46 187.6 166 59.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.4e-45 186.8 166 59.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.8e-45 186.4 166 58.4
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-45 186.4 166 59.6
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-45 186.0 165 59.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.4e-45 186.0 166 57.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.1e-45 185.3 166 57.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 5.3e-45 184.9 166 57.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.3e-45 184.9 166 57.2
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.2e-44 183.7 168 57.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.0e-44 183.0 161 59.0
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.0e-44 183.0 166 57.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.6e-44 182.6 166 57.8
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.4e-44 182.2 166 56.6
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 4.5e-44 181.8 167 55.7
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.9e-44 181.4 166 57.8
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 5.9e-44 181.4 170 54.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.9e-44 181.4 161 57.1
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 7.7e-44 181.0 167 55.7
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 7.7e-44 181.0 166 57.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 161 59.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.7e-43 179.9 170 54.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.0e-43 178.3 159 59.1
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.5e-43 177.9 168 57.1
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.9e-42 176.4 176 57.4
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.9e-42 176.4 171 60.2
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.9e-42 176.4 171 55.6
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 9.4e-42 174.1 166 56.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-41 173.7 168 54.8
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-41 173.7 167 53.9
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.3e-40 169.5 164 53.0
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.0e-40 169.1 154 55.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.1e-39 167.2 129 65.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 7.4e-39 164.5 131 63.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.4e-39 164.5 160 53.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.7e-39 164.1 173 54.3
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 6.3e-38 161.4 128 64.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.2e-36 157.1 169 53.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.5e-34 149.4 165 46.7
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.2e-33 147.1 118 60.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.7e-33 146.0 129 57.4
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 6.1e-33 144.8 127 59.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.9e-32 142.1 130 56.9
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 9.7e-31 137.5 166 50.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-29 133.3 167 48.5
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.1e-29 132.5 165 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.1e-29 132.5 165 43.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-28 130.6 167 47.9
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.0e-28 129.8 167 47.9
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.9e-28 128.3 158 48.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 7.7e-28 127.9 172 45.3
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.2e-27 126.3 100 60.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.1e-25 118.2 147 44.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.8e-24 116.7 141 41.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.6e-23 112.8 135 42.2
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 5.7e-23 111.7 152 45.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.8e-21 106.7 122 41.8
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-20 104.0 91 56.0
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.5e-20 102.4 66 68.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 5.9e-20 101.7 80 63.8
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 8.8e-16 87.8 97 46.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.2e-14 83.2 103 40.8
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.1e-13 80.9 91 47.3
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 9.1e-13 77.8 83 49.4
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 3.5e-12 75.9 45 84.4
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.5e-12 75.9 63 52.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.5e-12 75.5 166 38.6
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-11 73.9 69 58.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-09 67.4 63 63.5
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.7e-09 65.5 68 58.8
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.0e-08 64.3 80 38.8
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.3e-08 63.2 64 57.8
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.0e-08 62.8 64 54.7
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 6.8e-08 61.6 64 54.7
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.0e-07 60.1 84 38.1
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 9.8e-07 57.8 105 31.4
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-06 57.0 63 49.2
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.7e-06 57.0 63 41.3
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.7e-06 57.0 60 50.0
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.8e-06 56.2 59 50.8
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.8e-06 56.2 59 50.8


User provided reference genes

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