Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 7.9e-124 447.2 239 100.0
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.7e-118 429.5 231 100.0
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.7e-118 429.5 231 100.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.1e-96 357.1 230 87.4
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.0e-83 313.9 238 71.4
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 6.8e-83 311.2 238 74.8
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 6.3e-81 304.7 234 75.6
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.8e-80 303.1 234 74.4
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.8e-80 303.1 237 70.0
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 4.1e-80 302.0 239 74.1
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.2e-66 257.3 240 67.1
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.7e-62 243.4 214 64.0
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.8e-43 180.3 234 45.3
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 2.4e-43 179.9 230 47.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 6.9e-43 178.3 233 47.6
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-42 177.6 233 44.6
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.5e-42 177.2 228 46.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.5e-42 177.2 233 45.1
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.0e-42 176.8 229 46.7
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.0e-42 176.8 230 47.4
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 5.8e-42 175.3 232 45.7
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 2.2e-41 173.3 232 45.7
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.2e-41 173.3 229 44.1
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.9e-41 172.9 229 46.3
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.8e-41 172.6 229 44.1
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.8e-41 172.6 229 43.7
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 8.4e-41 171.4 227 45.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.9e-40 170.2 232 45.7
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.2e-40 169.5 232 45.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.2e-40 169.1 232 45.3
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 4.2e-40 169.1 228 44.3
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 7.1e-40 168.3 229 45.9
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 9.3e-40 167.9 222 47.3
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.1e-39 166.8 228 45.6
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.6e-39 165.6 228 43.4
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.3e-38 164.1 232 44.4
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.3e-38 164.1 232 44.4
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.3e-38 164.1 231 42.0
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.3e-38 163.3 230 43.5
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.1e-38 162.2 229 45.4
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 5.1e-38 162.2 241 42.3
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.1e-38 162.2 232 43.1
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.3e-37 159.5 232 42.2
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 4.3e-37 159.1 228 43.4
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 4.3e-37 159.1 209 45.9
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.6e-37 158.7 194 47.4
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 5.6e-37 158.7 235 43.0
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.3e-36 157.5 187 48.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.8e-36 156.4 221 43.4
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 3.6e-36 156.0 237 41.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 8.1e-36 154.8 208 45.2
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.4e-35 154.1 229 42.4
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.4e-35 154.1 208 45.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.8e-35 153.7 242 40.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.0e-35 152.5 230 41.3
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 6.9e-35 151.8 204 41.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 6.9e-35 151.8 212 45.3
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 9.0e-35 151.4 242 40.1
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 9.0e-35 151.4 114 61.4
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-34 151.0 199 46.2
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.6e-34 149.8 204 41.2
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.6e-34 149.8 231 39.8
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.8e-34 148.7 230 40.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 2.9e-33 146.4 210 41.4
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.9e-33 146.4 210 43.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.9e-33 146.4 133 56.4
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.4e-33 145.2 229 41.0
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-32 144.4 128 54.7
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.4e-32 144.1 211 43.1
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.9e-32 143.7 235 41.7
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.9e-32 143.7 211 43.1
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.9e-32 143.7 229 38.9
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-32 143.7 134 53.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.9e-32 143.7 209 43.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.4e-32 143.3 241 39.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.2e-32 142.9 213 43.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 3.2e-32 142.9 232 40.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 5.4e-32 142.1 178 47.2
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 5.4e-32 142.1 130 55.4
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 9.3e-32 141.4 117 56.4
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 9.3e-32 141.4 236 40.7
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 9.3e-32 141.4 236 41.1
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.1e-31 140.2 116 59.5
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.7e-31 139.8 209 42.1
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.5e-31 139.4 135 50.4
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.5e-31 139.4 198 43.4
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.6e-31 139.0 128 53.1
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 4.6e-31 139.0 224 39.3
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 4.6e-31 139.0 193 44.6
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 6.0e-31 138.7 219 40.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.3e-30 137.5 210 45.2
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 6.7e-30 135.2 112 56.2
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 8.7e-30 134.8 179 43.0
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.5e-29 134.0 176 45.5
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 4.3e-29 132.5 211 40.8
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 4.3e-29 132.5 221 39.8
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 7.4e-29 131.7 211 40.8
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.1e-28 130.2 132 51.5
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.4e-27 126.7 92 64.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 4.0e-27 125.9 112 56.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.3e-27 125.6 184 41.3
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-26 124.4 231 39.0
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.5e-26 124.0 115 53.9
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 5.8e-26 122.1 228 36.0
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.3e-25 120.9 206 38.3
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.3e-25 120.9 228 36.0
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.9e-25 119.8 214 36.4
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.9e-25 119.0 234 35.0
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-24 117.9 186 42.5
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.9e-24 117.1 197 42.6
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 3.2e-24 116.3 230 35.2
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.2e-23 114.4 107 50.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.6e-23 114.0 113 48.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.7e-23 113.2 184 41.3
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.7e-23 113.2 220 36.8
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 6.0e-23 112.1 215 36.3
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 8.2e-20 101.7 95 50.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.0e-19 99.4 105 43.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.2e-18 97.8 107 46.7
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 7.6e-18 95.1 102 45.1
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 6.5e-17 92.0 176 37.5
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.2e-16 89.7 104 42.3
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 8.7e-14 81.6 67 55.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.5e-13 80.1 112 36.6
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.7e-10 68.6 64 50.0
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 2.1e-07 60.5 197 25.9
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 6.7e-06 55.5 158 31.6


User provided reference genes

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