Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 5.2e-251 870.5 426 100.0
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-218 763.1 426 89.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.2e-218 763.1 426 89.4
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 4.1e-216 754.6 426 87.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-215 751.9 426 88.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-203 711.4 427 81.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 7.6e-202 707.2 427 81.0
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 5.4e-200 701.0 426 80.3
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-199 699.9 427 79.9
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-199 699.5 429 79.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.1e-199 699.1 442 79.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-199 698.7 428 79.4
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.7e-199 698.7 438 80.4
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.6e-197 691.0 439 78.6
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.2e-196 687.6 439 78.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-192 676.8 429 76.7
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.1e-192 676.8 445 77.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.9e-192 676.0 436 77.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-192 675.6 429 76.2
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-191 673.3 429 76.7
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-189 666.8 429 76.2
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-189 665.6 429 75.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-189 665.6 429 75.8
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.2e-186 656.8 439 75.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 6.0e-175 617.8 436 71.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.6e-172 609.8 436 70.9
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.4e-171 605.9 441 69.2
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.2e-169 599.4 435 70.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.5e-167 592.0 435 69.7
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.3e-165 585.1 435 67.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 5.3e-163 578.2 432 68.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 9.0e-163 577.4 432 68.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 9.0e-163 577.4 432 68.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-162 577.0 432 68.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 7.6e-162 574.3 429 68.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.9e-161 572.4 433 67.4
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.5e-161 570.9 442 66.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.4e-144 516.9 471 56.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 6.7e-142 508.1 462 56.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.7e-142 508.1 471 57.1
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.4e-141 504.6 471 56.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.8e-140 502.7 470 54.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.1e-139 500.7 439 56.7
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.3e-139 498.4 469 54.8
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 4.5e-138 495.4 469 53.9
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-136 490.3 470 53.6
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.2e-136 489.2 466 54.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-136 489.2 463 54.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.2e-136 489.2 462 54.8
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.2e-136 488.8 462 54.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 4.2e-136 488.8 470 53.6
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 5.5e-136 488.4 469 54.6
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 5.5e-136 488.4 473 53.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 7.2e-136 488.0 445 54.2
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 9.4e-136 487.6 473 52.6
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-135 487.3 461 54.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-135 486.9 461 54.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.6e-135 486.9 472 52.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-135 486.5 462 54.5
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.6e-135 485.7 471 53.3
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.0e-135 484.6 468 53.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.0e-134 484.2 469 53.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.0e-134 484.2 469 53.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.0e-134 482.6 470 52.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.2e-134 481.9 469 54.4
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.2e-134 481.9 461 54.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 6.7e-134 481.5 466 53.6
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.8e-134 481.1 469 53.5
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.5e-133 480.3 470 53.2
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.0e-133 479.9 470 53.4
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.8e-132 476.1 470 52.6
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.7e-132 475.7 468 53.2
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 4.8e-132 475.3 452 53.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.3e-132 474.9 463 52.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 8.2e-132 474.6 473 51.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 8.2e-132 474.6 470 53.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 9.1e-131 471.1 467 51.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.2e-130 470.7 466 51.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.0e-130 469.9 468 52.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.7e-130 469.5 452 52.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.3e-129 467.2 447 54.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.2e-129 466.5 448 53.8
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 5.0e-129 465.3 469 52.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 6.5e-129 464.9 448 53.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.5e-128 463.0 476 51.3
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.2e-128 462.6 453 53.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.1e-127 459.9 477 50.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 6.1e-127 458.4 455 51.6
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 8.0e-127 458.0 471 50.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.4e-126 457.2 470 50.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.8e-126 456.8 471 51.0
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.3e-126 456.4 448 52.2
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.3e-126 456.4 466 50.4
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.3e-126 456.4 473 49.3
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.2e-126 455.3 455 51.4
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 6.8e-126 454.9 447 52.8
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 6.8e-126 454.9 453 50.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-125 454.1 433 58.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-125 454.1 476 50.2
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.5e-125 453.8 472 51.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.0e-125 453.4 458 50.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.4e-125 452.2 454 52.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 5.7e-125 451.8 455 52.3
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 9.8e-125 451.1 448 51.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.3e-124 450.7 471 50.3
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-122 443.4 433 57.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.0e-122 443.4 439 51.5
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.7e-122 443.0 440 51.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.5e-122 442.6 470 48.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.5e-122 442.6 448 50.2
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.9e-122 441.8 447 50.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.0e-121 441.0 452 49.8
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.7e-121 440.3 445 51.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.8e-121 439.1 449 48.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 6.6e-121 438.3 464 48.7
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.5e-120 436.4 473 49.7
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 7.2e-120 434.9 433 49.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.2e-119 434.1 465 48.4
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.2e-119 434.1 466 49.6
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.1e-119 433.3 450 49.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.8e-119 433.0 442 50.9
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.8e-119 433.0 471 49.5
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.0e-118 431.0 464 50.0
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.4e-118 430.6 429 51.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.8e-118 430.3 463 49.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 8.9e-118 427.9 444 48.9
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 3.4e-117 426.0 464 48.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.7e-117 425.2 464 49.6
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.7e-117 425.2 444 49.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 9.8e-117 424.5 438 50.2
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 2.8e-116 422.9 419 50.1
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-115 419.1 464 47.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.5e-114 415.6 458 47.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.7e-113 413.7 466 48.5
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-112 409.5 411 51.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.6e-112 408.7 428 49.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-111 407.1 459 46.2
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-111 407.1 466 44.8
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.4e-107 392.1 431 47.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.3e-104 382.5 403 47.9
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 6.8e-102 375.2 383 50.4
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 5.8e-101 372.1 441 46.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 4.1e-99 365.9 430 46.0
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.6e-98 364.0 457 44.2
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.5e-96 354.8 452 42.5
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.8e-94 350.5 417 44.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 9.9e-93 344.7 302 56.3
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 9.9e-93 344.7 302 56.3
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-92 344.0 201 86.6
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.7e-92 342.8 201 86.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.9e-89 332.8 427 41.7
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-87 327.8 429 41.0
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-87 326.6 449 40.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.9e-86 321.6 447 41.2
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-85 321.2 448 40.6
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.9e-78 295.4 436 39.4
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-62 243.0 166 74.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-58 231.1 352 37.2
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 8.7e-57 225.3 337 40.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.0e-54 215.3 210 52.4
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 8.2e-47 192.2 276 44.2
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.7e-44 184.5 205 48.8
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-41 174.5 158 53.8
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 8.2e-39 165.6 201 45.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.4e-37 160.2 121 71.9
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.7e-31 141.4 86 82.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 9.1e-30 135.6 88 80.7
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.6e-26 124.8 167 42.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 6.7e-25 119.4 330 27.0
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.0e-16 91.3 127 40.9
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-13 80.9 43 90.7
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 5.0e-12 76.6 60 70.0
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.8e-07 60.8 150 30.7


User provided reference genes

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