Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09053 Brassica carinata HOM05D001629 ORTHO05D004216 3.6e-26 120.9 66 100.0
BcaC01g05434 Brassica carinata HOM05D001629 ORTHO05D004216 2.3e-25 118.2 64 100.0
A03p22550 Brassica napus HOM05D001629 ORTHO05D004216 2.3e-25 118.2 64 100.0
BolC3t15055H Brassica oleracea HOM05D001629 ORTHO05D004216 2.3e-25 118.2 64 100.0
BraA03t11481Z Brassica rapa HOM05D001629 ORTHO05D004216 2.3e-25 118.2 64 100.0
A04p30080 Brassica napus HOM05D001629 ORTHO05D004216 5.2e-25 117.1 64 98.4
BraA04t18499Z Brassica rapa HOM05D001629 ORTHO05D004216 5.2e-25 117.1 64 98.4
AL4G37740 Arabidopsis lyrata HOM05D001629 ORTHO05D004216 8.8e-25 116.3 64 96.9
BcaC02g07351 Brassica carinata HOM05D001629 ORTHO05D004216 1.2e-24 115.9 64 96.9
C04p67780 Brassica napus HOM05D001629 ORTHO05D004216 1.2e-24 115.9 64 96.9
BolC4t28281H Brassica oleracea HOM05D001629 ORTHO05D004216 1.2e-24 115.9 64 96.9
Carub.0004s2226 Capsella rubella HOM05D001629 ORTHO05D004216 1.2e-24 115.9 64 96.9
CARHR135060 Cardamine hirsuta HOM05D001629 ORTHO05D004216 2.6e-24 114.8 64 95.3
Thhalv10017237m.g Eutrema salsugineum HOM05D001629 ORTHO05D004216 3.4e-24 114.4 64 95.3
BcaNung05465 Brassica carinata HOM05D001629 ORTHO05D004216 7.5e-24 113.2 64 95.3
AT2G40095 Arabidopsis thaliana HOM05D001629 ORTHO05D004216 1.3e-23 112.5 64 93.8
Sp4g22400 Schrenkiella parvula HOM05D001629 ORTHO05D004216 2.2e-23 111.7 64 93.8
A07p22690 Brassica napus HOM05D001629 ORTHO05D004216 8.9e-17 89.7 70 68.6
CARHR165980 Cardamine hirsuta HOM05D001629 ORTHO05D004216 1.2e-16 89.4 74 68.9
BcaB01g00052 Brassica carinata HOM05D001629 ORTHO05D004216 1.5e-16 89.0 70 71.4
THA.LOC104824315 Tarenaya hassleriana HOM05D001629 ORTHO05D004216 1.5e-16 89.0 71 73.2
A09p48860 Brassica napus HOM05D001629 ORTHO05D004216 2.0e-16 88.6 69 71.0
BraA09t40341Z Brassica rapa HOM05D001629 ORTHO05D004216 2.0e-16 88.6 69 71.0
Thhalv10010703m.g Eutrema salsugineum HOM05D001629 ORTHO05D004216 2.6e-16 88.2 74 68.9
C08p31200 Brassica napus HOM05D001629 ORTHO05D004216 3.4e-16 87.8 69 71.0
BolC8t50743H Brassica oleracea HOM05D001629 ORTHO05D004216 3.4e-16 87.8 69 71.0
Lj1A954T15 Lonicera japonica HOM05D001629 ORTHO05D004216 3.4e-16 87.8 69 72.5
C02p15570 Brassica napus HOM05D001629 ORTHO05D004216 5.7e-16 87.0 69 68.1
BolC6t37493H Brassica oleracea HOM05D001629 ORTHO05D004216 5.7e-16 87.0 69 68.1
BraA07t29937Z Brassica rapa HOM05D001629 ORTHO05D004216 5.7e-16 87.0 69 68.1
BcaB02g07673 Brassica carinata HOM05D001629 ORTHO05D004216 7.5e-16 86.7 69 69.6
BcaC08g44754 Brassica carinata HOM05D001629 ORTHO05D004216 1.3e-15 85.9 69 66.7
C06p23190 Brassica napus HOM05D001629 ORTHO05D004216 1.3e-15 85.9 69 66.7
AL5G37170 Arabidopsis lyrata HOM05D001629 ORTHO05D004216 2.8e-15 84.7 74 64.9
Carub.0005s2265 Capsella rubella HOM05D001629 ORTHO05D004216 2.8e-15 84.7 73 65.8
AT3G55880 Arabidopsis thaliana HOM05D001629 ORTHO05D004216 6.3e-15 83.6 74 66.2
Thecc.10G019900 Theobroma cacao HOM05D001629 ORTHO05D004216 6.3e-15 83.6 70 70.0
SalBow6G5217 Salvia bowleyana HOM05D001629 ORTHO05D004216 1.1e-14 82.8 69 69.6
Sp5g06620 Schrenkiella parvula HOM05D001629 ORTHO05D004216 1.1e-14 82.8 73 65.8
Dinv10628 Davidia involucrata HOM05D001629 ORTHO05D004216 1.4e-14 82.4 69 68.1
Dinv34390 Davidia involucrata HOM05D001629 ORTHO05D004216 1.4e-14 82.4 69 68.1
DCAR_011809 Daucus carota HOM05D001629 ORTHO05D004216 1.8e-14 82.0 64 65.6
Duzib106G0048 Durio zibethinus HOM05D001629 ORTHO05D004216 2.4e-14 81.6 68 64.7
Duzib114G0106 Durio zibethinus HOM05D001629 ORTHO05D004216 3.1e-14 81.3 69 65.2
Duzib128G1394 Durio zibethinus HOM05D001629 ORTHO05D004216 4.1e-14 80.9 69 63.8
Gohir.D04G067600 Gossypium hirsutum HOM05D001629 ORTHO05D004216 7.0e-14 80.1 67 64.2
Gorai.012G076800 Gossypium raimondii HOM05D001629 ORTHO05D004216 7.0e-14 80.1 67 64.2
Gohir.A05G329600 Gossypium hirsutum HOM05D001629 ORTHO05D004216 9.2e-14 79.7 67 62.7
Migut.F00678 Erythranthe guttata HOM05D001629 ORTHO05D004216 1.2e-13 79.3 69 62.3
FvH4_7g24390 Fragaria vesca HOM05D001629 ORTHO05D004216 1.2e-13 79.3 68 66.2
HanXRQChr14g0459821 Helianthus annuus HOM05D001629 ORTHO05D004216 1.2e-13 79.3 72 62.5
THA.LOC104810574 Tarenaya hassleriana HOM05D001629 ORTHO05D004216 1.2e-13 79.3 77 62.3
MSTRG.8952 Avicennia marina HOM05D001629 ORTHO05D004216 1.6e-13 79.0 69 63.8
CSS0000908 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D004216 1.6e-13 79.0 70 64.3
Psat5g127840 Pisum sativum HOM05D001629 ORTHO05D004216 1.6e-13 79.0 68 66.2
Aa31LG5G19510 Aethionema arabicum HOM05D001629 ORTHO05D004216 2.0e-13 78.6 64 71.9
MSTRG.207 Avicennia marina HOM05D001629 ORTHO05D004216 2.0e-13 78.6 69 63.8
Oeu025640.3 Olea europaea HOM05D001629 ORTHO05D004216 2.0e-13 78.6 69 68.1
AUR62012240 Chenopodium quinoa HOM05D001629 ORTHO05D004216 2.7e-13 78.2 67 64.2
Haze_17220 Corylus avellana HOM05D001629 ORTHO05D004216 2.7e-13 78.2 69 63.8
Gohir.A13G015500 Gossypium hirsutum HOM05D001629 ORTHO05D004216 2.7e-13 78.2 64 64.1
Lsat_1_v5_gn_9_61260 Lactuca sativa HOM05D001629 ORTHO05D004216 2.7e-13 78.2 72 63.9
QL08p063075 Quercus lobata HOM05D001629 ORTHO05D004216 2.7e-13 78.2 69 63.8
Lj6g0004743 Lotus japonicus HOM05D001629 ORTHO05D004216 3.5e-13 77.8 68 64.7
Cc02_g06610 Coffea canephora HOM05D001629 ORTHO05D004216 4.5e-13 77.4 69 68.1
Manes.07G128800 Manihot esculenta HOM05D001629 ORTHO05D004216 4.5e-13 77.4 69 63.8
Ciclev10032760m.g Citrus clementina HOM05D001629 ORTHO05D004216 5.9e-13 77.0 69 62.3
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-13 77.0 67 65.7
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-13 77.0 68 64.7
Gohir.A06G164000 Gossypium hirsutum HOM05D001629 ORTHO05D004216 5.9e-13 77.0 68 66.2
Gohir.D06G169300 Gossypium hirsutum HOM05D001629 ORTHO05D004216 5.9e-13 77.0 68 66.2
Gorai.010G198400 Gossypium raimondii HOM05D001629 ORTHO05D004216 5.9e-13 77.0 68 66.2
RcHm_v2.0_Chr1g0370091 Rosa chinensis HOM05D001629 ORTHO05D004216 5.9e-13 77.0 68 64.7
vmacro06974 Vaccinium macrocarpon HOM05D001629 ORTHO05D004216 5.9e-13 77.0 69 65.2
FAN06G3570 Fragaria x ananassa HOM05D001629 ORTHO05D004216 7.8e-13 76.6 68 64.7
Sopen05g031270 Solanum pennellii HOM05D001629 ORTHO05D004216 7.8e-13 76.6 69 62.3
PGSC0003DMG400027185 Solanum tuberosum HOM05D001629 ORTHO05D004216 7.8e-13 76.6 69 63.8
vmacro10048 Vaccinium macrocarpon HOM05D001629 ORTHO05D004216 7.8e-13 76.6 71 64.8
Eucgr.G03058 Eucalyptus grandis HOM05D001629 ORTHO05D004216 1.0e-12 76.3 70 61.4
FAN03G2638 Fragaria x ananassa HOM05D001629 ORTHO05D004216 1.0e-12 76.3 68 63.2
Gohir.A10G235400 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.0e-12 76.3 70 60.0
Medtr3g070400 Medicago truncatula HOM05D001629 ORTHO05D004216 1.0e-12 76.3 68 64.7
Peaxi162Scf01208g00135 Petunia axillaris HOM05D001629 ORTHO05D004216 1.0e-12 76.3 69 62.3
Gorai.013G018400 Gossypium raimondii HOM05D001629 ORTHO05D004216 1.3e-12 75.9 64 62.5
Prupe.2G249300 Prunus persica HOM05D001629 ORTHO05D004216 1.3e-12 75.9 69 62.3
Rhsim03G0143200 Rhododendron simsii HOM05D001629 ORTHO05D004216 1.3e-12 75.9 70 65.7
VMungo1383G2947 Vigna mungo HOM05D001629 ORTHO05D004216 1.3e-12 75.9 68 61.8
Atru.chr12.25 Acer truncatum HOM05D001629 ORTHO05D004216 1.7e-12 75.5 70 62.9
Oeu005848.1 Olea europaea HOM05D001629 ORTHO05D004216 2.3e-12 75.1 66 66.7
Sabra10G0146200 Salix brachista HOM05D001629 ORTHO05D004216 2.3e-12 75.1 69 59.4
TAR636G0558 Trochodendron aralioides HOM05D001629 ORTHO05D004216 2.3e-12 75.1 69 62.3
Actinidia00946 Actinidia chinensis HOM05D001629 ORTHO05D004216 2.9e-12 74.7 70 62.9
Gohir.D10G247800 Gossypium hirsutum HOM05D001629 ORTHO05D004216 2.9e-12 74.7 70 58.6
TPR.G2531 Trifolium pratense HOM05D001629 ORTHO05D004216 2.9e-12 74.7 70 61.4
Gorai.011G286300 Gossypium raimondii HOM05D001629 ORTHO05D004216 3.9e-12 74.3 70 58.6
Sc10g0002320 Simmondsia chinensis HOM05D001629 ORTHO05D004216 3.9e-12 74.3 65 64.6
Lsat_1_v5_gn_2_122961 Lactuca sativa HOM05D001629 ORTHO05D004216 5.0e-12 73.9 80 57.5
Oeu048492.2 Olea europaea HOM05D001629 ORTHO05D004216 5.0e-12 73.9 69 60.9
Cpa.g.sc19.180 Carica papaya HOM05D001629 ORTHO05D004216 6.6e-12 73.6 69 59.4
HanXRQChr07g0202951 Helianthus annuus HOM05D001629 ORTHO05D004216 6.6e-12 73.6 74 60.8
Lj8A68T45 Lonicera japonica HOM05D001629 ORTHO05D004216 6.6e-12 73.6 69 63.8
Lalb_Chr18g0052581 Lupinus albus HOM05D001629 ORTHO05D004216 6.6e-12 73.6 64 65.6
MD07G1221300 Malus domestica HOM05D001629 ORTHO05D004216 6.6e-12 73.6 69 62.3
TWI09G1333 Tripterygium wilfordii HOM05D001629 ORTHO05D004216 6.6e-12 73.6 69 59.4
TAR633G1117 Trochodendron aralioides HOM05D001629 ORTHO05D004216 6.6e-12 73.6 69 62.3
MD01G1152300 Malus domestica HOM05D001629 ORTHO05D004216 8.6e-12 73.2 69 60.9
Peaxi162Scf00957g00223 Petunia axillaris HOM05D001629 ORTHO05D004216 8.6e-12 73.2 69 58.0
Solyc05g052750.3 Solanum lycopersicum HOM05D001629 ORTHO05D004216 8.6e-12 73.2 69 63.8
GSVIVG01032833001 Vitis vinifera HOM05D001629 ORTHO05D004216 8.6e-12 73.2 69 59.4
ECA232G0882 Erigeron canadensis HOM05D001629 ORTHO05D004216 1.1e-11 72.8 76 55.3
Glyma.11G229100 Glycine max HOM05D001629 ORTHO05D004216 1.1e-11 72.8 68 60.3
TWI73G0747 Tripterygium wilfordii HOM05D001629 ORTHO05D004216 1.1e-11 72.8 69 58.0
Glyma.18G028100 Glycine max HOM05D001629 ORTHO05D004216 1.5e-11 72.4 68 60.3
Gohir.D13G016700 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.5e-11 72.4 64 59.4
Phvul.001G242400 Phaseolus vulgaris HOM05D001629 ORTHO05D004216 1.5e-11 72.4 68 61.8
Potri.008G067700 Populus trichocarpa HOM05D001629 ORTHO05D004216 1.5e-11 72.4 69 60.9
Glyma.14G059800 Glycine max HOM05D001629 ORTHO05D004216 1.9e-11 72.0 64 62.5
Lalb_Chr08g0231731 Lupinus albus HOM05D001629 ORTHO05D004216 1.9e-11 72.0 64 59.4
Nn2g11483 Nelumbo nucifera HOM05D001629 ORTHO05D004216 1.9e-11 72.0 69 59.4
arahy.Tifrunner.gnm1.ann1.2VU9BG Arachis hypogaea HOM05D001629 ORTHO05D004216 2.5e-11 71.6 74 58.1
arahy.Tifrunner.gnm1.ann1.WYEN9E Arachis hypogaea HOM05D001629 ORTHO05D004216 2.5e-11 71.6 73 56.2
CAN.G503.10 Capsicum annuum HOM05D001629 ORTHO05D004216 2.5e-11 71.6 69 59.4
Migut.F01381 Erythranthe guttata HOM05D001629 ORTHO05D004216 2.5e-11 71.6 69 59.4
Lalb_Chr15g0084141 Lupinus albus HOM05D001629 ORTHO05D004216 2.5e-11 71.6 64 64.1
Hund13851 Selenicereus undatus HOM05D001629 ORTHO05D004216 2.5e-11 71.6 70 57.1
Ah.16g103460 Amaranthus hybridus HOM05D001629 ORTHO05D004216 3.3e-11 71.2 67 59.7
arahy.Tifrunner.gnm1.ann1.01DT97 Arachis hypogaea HOM05D001629 ORTHO05D004216 3.3e-11 71.2 74 55.4
CiPaw.01G298000 Carya illinoinensis HOM05D001629 ORTHO05D004216 3.3e-11 71.2 69 59.4
Nn2g13705 Nelumbo nucifera HOM05D001629 ORTHO05D004216 4.3e-11 70.9 69 59.4
CsaV3_6G001810 Cucumis sativus L. HOM05D001629 ORTHO05D004216 5.6e-11 70.5 69 60.9
Glyma.02G256900 Glycine max HOM05D001629 ORTHO05D004216 5.6e-11 70.5 64 62.5
Oeu025171.1 Olea europaea HOM05D001629 ORTHO05D004216 5.6e-11 70.5 65 64.6
Peaxi162Scf00825g00016 Petunia axillaris HOM05D001629 ORTHO05D004216 5.6e-11 70.5 69 60.9
Sed0012326 Sechium edule HOM05D001629 ORTHO05D004216 5.6e-11 70.5 64 60.9
arahy.Tifrunner.gnm1.ann1.MMYB4K Arachis hypogaea HOM05D001629 ORTHO05D004216 7.3e-11 70.1 74 56.8
MELO3C025189.2 Cucumis melo HOM05D001629 ORTHO05D004216 7.3e-11 70.1 69 58.0
CsaV3_5G010090 Cucumis sativus L. HOM05D001629 ORTHO05D004216 7.3e-11 70.1 69 58.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.3e-11 70.1 61 63.9
Manes.10G013500 Manihot esculenta HOM05D001629 ORTHO05D004216 7.3e-11 70.1 71 56.3
SalBow6G1496 Salvia bowleyana HOM05D001629 ORTHO05D004216 1.6e-10 68.9 67 61.2
Rhsim09G0176900 Rhododendron simsii HOM05D001629 ORTHO05D004216 2.1e-10 68.6 68 60.3
unitig_747.g21414 Utricularia gibba HOM05D001629 ORTHO05D004216 2.1e-10 68.6 64 62.5
Dinv17989 Davidia involucrata HOM05D001629 ORTHO05D004216 2.8e-10 68.2 69 58.0
Lalb_Chr17g0346751 Lupinus albus HOM05D001629 ORTHO05D004216 2.8e-10 68.2 68 55.9
Nitab4.5_0002100g0050 Nicotiana tabacum HOM05D001629 ORTHO05D004216 2.8e-10 68.2 62 64.5
MBI04_g35057_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D004216 3.6e-10 67.8 67 58.2
MBI11_g32502_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D004216 3.6e-10 67.8 67 56.7
Nitab4.5_0000395g0050 Nicotiana tabacum HOM05D001629 ORTHO05D004216 3.6e-10 67.8 62 64.5
CANSAT56G2974 Cannabis sativa HOM05D001629 ORTHO05D004216 6.1e-10 67.0 85 49.4
ClCG07G004130 Citrullus lanatus HOM05D001629 ORTHO05D004216 6.1e-10 67.0 69 56.5
Nitab4.5_0004338g0090 Nicotiana tabacum HOM05D001629 ORTHO05D004216 6.1e-10 67.0 62 61.3
PSO801G0446 Papaver somniferum HOM05D001629 ORTHO05D004216 8.0e-10 66.6 80 51.2
Phvul.008G224400 Phaseolus vulgaris HOM05D001629 ORTHO05D004216 1.0e-09 66.2 64 56.2
Potri.010G189600 Populus trichocarpa HOM05D001629 ORTHO05D004216 1.0e-09 66.2 69 56.5
DCAR_024832 Daucus carota HOM05D001629 ORTHO05D004216 1.4e-09 65.9 69 60.9
PSO339G5706 Papaver somniferum HOM05D001629 ORTHO05D004216 2.3e-09 65.1 80 50.0
Lalb_Chr10g0105131 Lupinus albus HOM05D001629 ORTHO05D004216 3.1e-09 64.7 68 52.9
Aqoxy4G02578 Aquilegia oxysepala HOM05D001629 ORTHO05D004216 4.0e-09 64.3 68 58.8
SGA_v2.0_scaffold44G16692 Striga asiatica HOM05D001629 ORTHO05D004216 4.0e-09 64.3 68 54.4
HanXRQChr09g0251471 Helianthus annuus HOM05D001629 ORTHO05D004216 6.8e-09 63.5 82 48.8
ECA238G0356 Erigeron canadensis HOM05D001629 ORTHO05D004216 2.0e-08 62.0 64 57.8
VMungo0647G0798 Vigna mungo HOM05D001629 ORTHO05D004216 2.6e-08 61.6 64 54.7
PSO339G5606 Papaver somniferum HOM05D001629 ORTHO05D004216 3.4e-08 61.2 69 52.2
BcaB01g00055 Brassica carinata HOM05D001629 ORTHO05D004216 7.5e-08 60.1 34 79.4
ATR0661G149 Amborella trichopoda HOM05D001629 ORTHO05D004216 3.7e-07 57.8 64 57.8
Sopen03g038870 Solanum pennellii HOM05D001629 ORTHO05D003842 3.7e-07 57.8 66 47.0
SEGI_32935 Sequoiadendron giganteum HOM05D001629 ORTHO05D003842 6.4e-07 57.0 64 48.4
PGSC0003DMG400005696 Solanum tuberosum HOM05D001629 ORTHO05D003842 8.3e-07 56.6 66 47.0
Solyc03g119990.4 Solanum lycopersicum HOM05D001629 ORTHO05D003842 1.1e-06 56.2 66 45.5
HanXRQChr16g0504231 Helianthus annuus HOM05D001629 ORTHO05D003842 4.1e-06 54.3 66 40.9
MSTRG.9443 Avicennia marina HOM05D001629 ORTHO05D003842 5.4e-06 53.9 66 48.5
Sc11g0005010 Simmondsia chinensis HOM05D001629 ORTHO05D004216 7.0e-06 53.5 64 51.6
CAN.G438.91 Capsicum annuum HOM05D001629 ORTHO05D003842 9.2e-06 53.1 66 43.9
Nn8g39343 Nelumbo nucifera HOM05D001629 ORTHO05D003842 9.2e-06 53.1 66 45.5


User provided reference genes

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