Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.6e-209 731.9 379 100.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-180 635.2 379 88.9
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.2e-179 633.3 379 88.7
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 5.7e-177 624.4 379 87.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.7e-177 624.4 379 87.6
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.3e-176 623.2 380 87.1
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-176 622.9 380 87.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.8e-176 622.1 379 86.5
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.9e-176 621.3 380 88.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 3.8e-173 611.7 382 85.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.9e-168 594.7 382 85.3
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 8.3e-168 594.0 379 86.5
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.1e-167 593.6 380 84.7
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.1e-164 583.6 358 86.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.0e-161 572.8 382 82.2
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.6e-155 553.1 382 77.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.7e-155 551.6 382 77.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.9e-149 531.9 385 76.4
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.5e-121 438.7 384 61.2
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.4e-120 434.9 384 62.0
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 8.4e-120 434.5 383 60.3
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.1e-119 434.1 384 59.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.1e-119 434.1 381 61.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.9e-119 433.3 382 61.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.2e-119 432.2 385 59.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 7.1e-119 431.4 385 61.0
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.8e-117 426.8 382 61.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-117 426.0 386 59.1
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 8.7e-117 424.5 387 59.9
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.5e-116 423.7 391 57.8
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.5e-116 422.9 387 60.2
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.3e-116 422.5 391 59.1
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.3e-116 422.2 387 58.4
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.6e-116 421.8 387 58.4
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 7.4e-116 421.4 386 59.3
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 9.6e-116 421.0 385 57.7
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.6e-115 420.2 384 57.3
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.8e-115 418.7 383 58.7
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-114 417.5 385 57.1
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.1e-114 417.5 383 60.1
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-114 416.8 387 59.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.1e-114 416.0 381 58.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.0e-114 415.6 385 57.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 2.0e-113 413.3 384 56.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 3.4e-113 412.5 385 59.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.4e-113 412.5 379 57.5
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.5e-113 412.1 387 58.9
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 5.8e-113 411.8 381 57.2
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.0e-112 411.0 387 58.9
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.0e-112 411.0 390 57.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 4.9e-112 408.7 381 57.2
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.2e-111 406.0 387 56.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.3e-111 404.4 384 55.2
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.6e-110 403.7 379 55.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.1e-110 403.3 383 56.7
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.7e-110 402.9 383 55.9
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 6.0e-110 401.7 382 55.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 7.9e-110 401.4 379 55.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 1.3e-109 400.6 304 74.7
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.3e-109 400.6 382 54.7
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.9e-109 399.1 383 55.9
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 3.9e-109 399.1 384 55.7
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.9e-109 399.1 346 63.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 5.1e-109 398.7 383 54.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-108 397.5 382 55.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-108 397.5 382 55.8
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.9e-108 396.7 384 56.2
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.7e-108 395.2 384 56.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 9.7e-108 394.4 385 55.3
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 9.7e-108 394.4 383 54.8
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.2e-107 393.3 383 53.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 6.3e-107 391.7 381 56.7
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 8.2e-107 391.3 380 56.6
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 8.2e-107 391.3 376 55.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.0e-105 386.7 384 54.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.6e-105 386.3 381 54.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 4.5e-105 385.6 377 55.2
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 5.0e-104 382.1 388 53.6
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.5e-104 381.7 381 54.3
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-103 380.2 385 51.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.5e-103 379.8 426 50.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.9e-102 374.8 382 53.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.0e-101 374.4 414 51.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.0e-101 372.9 359 56.5
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 3.3e-100 369.4 375 53.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 7.4e-100 368.2 383 53.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 9.7e-100 367.9 380 54.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.3e-99 367.5 372 56.5
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.3e-99 367.5 384 52.9
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.7e-99 367.1 364 55.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 3.7e-99 365.9 362 55.0
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.8e-99 365.5 385 51.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.4e-98 363.2 384 52.3
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.3e-98 362.1 401 51.9
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.2e-97 360.9 359 54.6
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 4.5e-97 359.0 361 53.7
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.1e-95 354.4 360 54.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.5e-95 353.2 356 55.9
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 7.2e-95 351.7 381 53.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.6e-94 350.5 335 54.9
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.4e-93 347.4 344 54.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.8e-93 347.1 383 49.6
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.8e-93 347.1 385 48.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.8e-93 347.1 384 48.4
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.0e-93 346.3 387 49.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.7e-93 345.1 361 52.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.1e-92 344.4 384 51.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.5e-92 344.0 342 56.4
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.0e-92 343.6 384 48.4
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 3.1e-90 336.3 380 51.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 8.5e-88 328.2 381 48.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.1e-87 327.8 387 48.6
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.2e-87 326.2 332 53.0
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.5e-87 325.5 314 56.7
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.4e-87 324.7 406 46.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.0e-85 321.2 340 54.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.8e-85 320.5 361 49.6
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.3e-83 314.3 393 46.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.2e-83 313.5 352 52.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 6.7e-77 292.0 307 52.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.4e-74 283.5 399 42.4
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.7e-72 277.3 384 44.0
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 8.8e-69 265.0 351 44.2
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.3e-67 261.2 490 36.1
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.1e-66 258.1 413 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.3e-64 250.4 395 38.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.8e-64 249.6 313 47.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 6.5e-64 248.8 391 37.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.0e-61 239.6 252 51.6
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.2e-60 238.0 285 49.1
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.8e-59 233.4 228 57.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.3e-59 232.3 299 47.8
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.1e-50 204.9 346 37.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 7.0e-50 202.2 395 32.9
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.0e-48 198.4 267 47.2
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.6e-48 195.3 250 45.2
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.5e-47 193.7 247 47.8
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.3e-47 193.4 224 46.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.5e-44 184.5 275 42.5
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.8e-44 181.8 209 48.8
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.9e-43 180.3 145 60.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.2e-42 176.8 266 45.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.0e-36 157.5 144 54.9
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.9e-35 153.7 120 63.3
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.1e-30 135.6 156 55.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 6.6e-24 115.9 73 69.9
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 2.8e-22 110.5 205 29.8
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-21 108.2 125 48.8
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 8.4e-19 99.0 426 23.2
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-18 97.4 57 80.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.4e-10 70.9 42 76.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.1e-09 67.8 78 51.3
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.3e-08 65.1 51 60.8
BcaC04g20550 Brassica carinata HOM05D016321 ORTHO05D090386 6.2e-06 56.2 74 47.3


User provided reference genes

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