Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09010 Brassica carinata HOM05D005704 ORTHO05D040026 2.1e-61 238.8 119 100.0
C04p71830 Brassica napus HOM05D005704 ORTHO05D006897 4.0e-44 181.4 108 85.2
BolC4t28681H Brassica oleracea HOM05D005704 ORTHO05D006897 4.0e-44 181.4 108 85.2
BcaC02g07052 Brassica carinata HOM05D005704 ORTHO05D006897 1.2e-43 179.9 108 84.3
BcaC02g07053 Brassica carinata HOM05D005704 ORTHO05D006897 2.0e-43 179.1 108 86.1
BraA04t18864Z Brassica rapa HOM05D005704 ORTHO05D006897 4.5e-43 177.9 107 85.0
A04p34030 Brassica napus HOM05D005704 ORTHO05D006897 5.8e-43 177.6 107 85.0
Thhalv10001508m.g Eutrema salsugineum HOM05D005704 ORTHO05D006897 1.4e-41 172.9 108 85.2
BcaB02g09007 Brassica carinata HOM05D005704 ORTHO05D006897 4.2e-41 171.4 108 82.4
Sp4g27850 Schrenkiella parvula HOM05D005704 ORTHO05D006897 9.3e-41 170.2 108 83.3
Carub.0004s2848 Capsella rubella HOM05D005704 ORTHO05D006897 1.6e-40 169.5 108 83.3
BcaC02g12182 Brassica carinata HOM05D005704 ORTHO05D006897 4.6e-40 167.9 108 81.5
AL4G44970 Arabidopsis lyrata HOM05D005704 ORTHO05D006897 3.9e-39 164.9 108 81.5
AT2G45770 Arabidopsis thaliana HOM05D005704 ORTHO05D006897 1.9e-38 162.5 108 81.5
A05p05770 Brassica napus HOM05D005704 ORTHO05D006897 1.9e-38 162.5 109 80.7
BraA05t19543Z Brassica rapa HOM05D005704 ORTHO05D006897 1.9e-38 162.5 109 80.7
Aa31LG1G27230 Aethionema arabicum HOM05D005704 ORTHO05D006897 8.1e-37 157.1 106 78.3
C04p06710 Brassica napus HOM05D005704 ORTHO05D006897 6.9e-36 154.1 108 77.8
BolC4t22292H Brassica oleracea HOM05D005704 ORTHO05D006897 6.9e-36 154.1 108 77.8
THA.LOC104817279 Tarenaya hassleriana HOM05D005704 ORTHO05D006897 4.3e-30 134.8 106 70.8
QL08p050136 Quercus lobata HOM05D005704 ORTHO05D006897 2.0e-27 125.9 118 62.7
Cfa004204 Carpinus fangiana HOM05D005704 ORTHO05D006897 4.5e-27 124.8 115 62.6
Prupe.2G157700 Prunus persica HOM05D005704 ORTHO05D006897 1.0e-26 123.6 105 64.8
Cpa.g.sc18.211 Carica papaya HOM05D005704 ORTHO05D006897 1.3e-26 123.2 111 63.1
CiPaw.02G026700 Carya illinoinensis HOM05D005704 ORTHO05D006897 2.2e-26 122.5 115 62.6
ClCG05G001760 Citrullus lanatus HOM05D005704 ORTHO05D006897 2.2e-26 122.5 107 64.5
Haze_15205 Corylus avellana HOM05D005704 ORTHO05D006897 5.0e-26 121.3 118 61.0
Sabra14G0057000 Salix brachista HOM05D005704 ORTHO05D006897 5.0e-26 121.3 110 63.6
CsaV3_3G009150 Cucumis sativus L. HOM05D005704 ORTHO05D006897 8.4e-26 120.6 70 84.3
MBI04_g04729_MAGBIO Magnolia biondii HOM05D005704 ORTHO05D006897 8.4e-26 120.6 71 81.7
vmacro20960 Vaccinium macrocarpon HOM05D005704 ORTHO05D006897 1.1e-25 120.2 113 56.6
Actinidia33435 Actinidia chinensis HOM05D005704 ORTHO05D006897 1.4e-25 119.8 68 83.8
GSVIVG01027497001 Vitis vinifera HOM05D005704 ORTHO05D006897 1.4e-25 119.8 112 63.4
Atru.chr5.425 Acer truncatum HOM05D005704 ORTHO05D006897 2.5e-25 119.0 70 82.9
Actinidia12718 Actinidia chinensis HOM05D005704 ORTHO05D006897 2.5e-25 119.0 79 74.7
Dinv43773 Davidia involucrata HOM05D005704 ORTHO05D006897 2.5e-25 119.0 70 82.9
Nn6g34198 Nelumbo nucifera HOM05D005704 ORTHO05D006897 2.5e-25 119.0 70 82.9
MELO3C006136.2 Cucumis melo HOM05D005704 ORTHO05D006897 3.2e-25 118.6 70 81.4
Lalb_Chr10g0097331 Lupinus albus HOM05D005704 ORTHO05D006897 3.2e-25 118.6 93 64.5
Manes.01G260600 Manihot esculenta HOM05D005704 ORTHO05D006897 3.2e-25 118.6 103 62.1
Cc00_g12130 Coffea canephora HOM05D005704 ORTHO05D006897 4.2e-25 118.2 94 67.0
Lj7A517T50 Lonicera japonica HOM05D005704 ORTHO05D006897 4.2e-25 118.2 108 63.0
MD01G1049200 Malus domestica HOM05D005704 ORTHO05D006897 4.2e-25 118.2 108 59.3
Phvul.010G093600 Phaseolus vulgaris HOM05D005704 ORTHO05D006897 4.2e-25 118.2 70 82.9
Potri.014G078800 Populus trichocarpa HOM05D005704 ORTHO05D006897 4.2e-25 118.2 104 62.5
CAN.G170.14 Capsicum annuum HOM05D005704 ORTHO05D006897 5.5e-25 117.9 105 59.0
CDE02G1367 Ceratophyllum demersum HOM05D005704 ORTHO05D006897 5.5e-25 117.9 70 80.0
Manes.05G038700 Manihot esculenta HOM05D005704 ORTHO05D006897 5.5e-25 117.9 106 62.3
Hma1.2p1_0001F.1_g001780 Hydrangea macrophylla HOM05D005704 ORTHO05D006897 7.2e-25 117.5 70 81.4
Oeu014688.2 Olea europaea HOM05D005704 ORTHO05D006897 7.2e-25 117.5 109 59.6
PGSC0003DMG400027773 Solanum tuberosum HOM05D005704 ORTHO05D006897 7.2e-25 117.5 106 60.4
TWI59G0155 Tripterygium wilfordii HOM05D005704 ORTHO05D006897 7.2e-25 117.5 70 81.4
Ah.05g176310 Amaranthus hybridus HOM05D005704 ORTHO05D006897 9.3e-25 117.1 109 61.5
Aqoxy7G00396 Aquilegia oxysepala HOM05D005704 ORTHO05D006897 9.3e-25 117.1 117 59.0
CANSAT56G4288 Cannabis sativa HOM05D005704 ORTHO05D006897 9.3e-25 117.1 106 60.4
Glyma.07G075900 Glycine max HOM05D005704 ORTHO05D006897 9.3e-25 117.1 70 81.4
Rhsim01G0153000 Rhododendron simsii HOM05D005704 ORTHO05D006897 9.3e-25 117.1 113 57.5
SalBow5G4035 Salvia bowleyana HOM05D005704 ORTHO05D006897 1.2e-24 116.7 108 56.5
HPP92_004951 Vanilla planifolia HOM05D005704 ORTHO05D006897 1.6e-24 116.3 70 78.6
Ciclev10020663m.g Citrus clementina HOM05D005704 ORTHO05D006897 2.1e-24 115.9 104 58.7
Eucgr.E00194 Eucalyptus grandis HOM05D005704 ORTHO05D006897 2.1e-24 115.9 67 83.6
Nitab4.5_0006421g0070 Nicotiana tabacum HOM05D005704 ORTHO05D006897 2.1e-24 115.9 94 62.8
SalBow5G2510 Salvia bowleyana HOM05D005704 ORTHO05D006897 2.1e-24 115.9 108 56.5
Solyc01g091580.3 Solanum lycopersicum HOM05D005704 ORTHO05D006897 2.7e-24 115.5 106 60.4
Sopen01g037350 Solanum pennellii HOM05D005704 ORTHO05D006897 2.7e-24 115.5 106 60.4
VMungo0331G0777 Vigna mungo HOM05D005704 ORTHO05D006897 2.7e-24 115.5 70 81.4
Thecc.01G366000 Theobroma cacao HOM05D005704 ORTHO05D006897 3.5e-24 115.2 70 80.0
CSS0006849 Camellia sinensis var. sinensis HOM05D005704 ORTHO05D006897 4.6e-24 114.8 67 80.6
DCAR_025148 Daucus carota HOM05D005704 ORTHO05D006897 4.6e-24 114.8 70 77.1
Glyma.03G015600 Glycine max HOM05D005704 ORTHO05D006897 4.6e-24 114.8 70 80.0
Migut.N01423 Erythranthe guttata HOM05D005704 ORTHO05D006897 6.1e-24 114.4 76 75.0
unitig_0.g2766 Utricularia gibba HOM05D005704 ORTHO05D006897 6.1e-24 114.4 67 79.1
FAN03G2921 Fragaria x ananassa HOM05D005704 ORTHO05D006897 7.9e-24 114.0 108 59.3
ATR0757G056 Amborella trichopoda HOM05D005704 ORTHO05D006897 1.3e-23 113.2 70 77.1
AUR62022755 Chenopodium quinoa HOM05D005704 ORTHO05D006897 1.3e-23 113.2 107 58.9
Lj3g0023098 Lotus japonicus HOM05D005704 ORTHO05D006897 1.3e-23 113.2 70 75.7
Sed0002697 Sechium edule HOM05D005704 ORTHO05D006897 1.3e-23 113.2 70 77.1
EL10Ac1g00515 Beta vulgaris HOM05D005704 ORTHO05D006897 1.8e-23 112.8 108 59.3
Nitab4.5_0005423g0010 Nicotiana tabacum HOM05D005704 ORTHO05D006897 1.8e-23 112.8 70 77.1
SGA_v2.0_scaffold11G05652 Striga asiatica HOM05D005704 ORTHO05D006897 1.8e-23 112.8 67 80.6
AUR62004305 Chenopodium quinoa HOM05D005704 ORTHO05D006897 3.0e-23 112.1 107 57.9
MSTRG.4872 Avicennia marina HOM05D005704 ORTHO05D006897 3.9e-23 111.7 93 64.5
Psat4g153600 Pisum sativum HOM05D005704 ORTHO05D006897 3.9e-23 111.7 96 62.5
Hund27313 Selenicereus undatus HOM05D005704 ORTHO05D006897 3.9e-23 111.7 115 57.4
arahy.Tifrunner.gnm1.ann1.5VQ11A Arachis hypogaea HOM05D005704 ORTHO05D006897 5.1e-23 111.3 117 57.3
Gohir.A11G086300 Gossypium hirsutum HOM05D005704 ORTHO05D006897 5.1e-23 111.3 70 78.6
Gohir.D11G090500 Gossypium hirsutum HOM05D005704 ORTHO05D006897 5.1e-23 111.3 70 78.6
TPR.G9825 Trifolium pratense HOM05D005704 ORTHO05D006897 5.1e-23 111.3 99 60.6
Ca_25785_v3 Cicer arietinum L. HOM05D005704 ORTHO05D006897 6.7e-23 110.9 70 74.3
Medtr8g032340 Medicago truncatula HOM05D005704 ORTHO05D006897 6.7e-23 110.9 72 70.8
PSO782G3686 Papaver somniferum HOM05D005704 ORTHO05D006897 6.7e-23 110.9 72 73.6
RcHm_v2.0_Chr1g0352781 Rosa chinensis HOM05D005704 ORTHO05D006897 8.7e-23 110.5 108 58.3
Gorai.007G096500 Gossypium raimondii HOM05D005704 ORTHO05D006897 1.1e-22 110.2 70 77.1
PGR042G1999 Punica granatum HOM05D005704 ORTHO05D006897 1.1e-22 110.2 107 60.7
arahy.Tifrunner.gnm1.ann1.G8YXW0 Arachis hypogaea HOM05D005704 ORTHO05D006897 1.9e-22 109.4 71 76.1
arahy.Tifrunner.gnm1.ann1.IAYA85 Arachis hypogaea HOM05D005704 ORTHO05D006897 1.9e-22 109.4 71 76.1
FvH4_7g13420 Fragaria vesca HOM05D005704 ORTHO05D006897 1.9e-22 109.4 108 58.3
FAN06G1057 Fragaria x ananassa HOM05D005704 ORTHO05D006897 1.9e-22 109.4 108 58.3
FAN06G2859 Fragaria x ananassa HOM05D005704 ORTHO05D006897 1.9e-22 109.4 108 58.3
Duzib138G1914 Durio zibethinus HOM05D005704 ORTHO05D006897 3.3e-22 108.6 70 78.6
Zm00001eb140490 Zea mays HOM05D005704 ORTHO05D006897 3.3e-22 108.6 70 74.3
arahy.Tifrunner.gnm1.ann1.P882K7 Arachis hypogaea HOM05D005704 ORTHO05D006897 5.7e-22 107.8 71 74.6
COL.COLO4_12606 Corchorus olitorius HOM05D005704 ORTHO05D006897 5.7e-22 107.8 70 75.7
RcHm_v2.0_Chr1g0352811 Rosa chinensis HOM05D005704 ORTHO05D006897 5.7e-22 107.8 108 57.4
FAN01G0806 Fragaria x ananassa HOM05D005704 ORTHO05D006897 7.4e-22 107.5 103 59.2
Os01g0958100 Oryza sativa ssp. japonica HOM05D005704 ORTHO05D006897 7.4e-22 107.5 108 56.5
FAN10G4172 Fragaria x ananassa HOM05D005704 ORTHO05D006897 2.2e-21 105.9 119 54.6
FAN10G2668 Fragaria x ananassa HOM05D005704 ORTHO05D006897 2.8e-21 105.5 67 79.1
ECA240G1317 Erigeron canadensis HOM05D005704 ORTHO05D006897 4.8e-21 104.8 81 67.9
FAN23G0404 Fragaria x ananassa HOM05D005704 ORTHO05D006897 6.3e-21 104.4 103 58.3
Lsat_1_v5_gn_3_135801 Lactuca sativa HOM05D005704 ORTHO05D006897 1.1e-20 103.6 73 74.0
Prupe.2G158000 Prunus persica HOM05D005704 ORTHO05D006897 3.1e-20 102.1 62 80.6
CDE11G0267 Ceratophyllum demersum HOM05D005704 ORTHO05D040026 9.0e-20 100.5 65 73.8
HanXRQChr13g0426231 Helianthus annuus HOM05D005704 ORTHO05D006897 9.0e-20 100.5 70 72.9
MD07G1126200 Malus domestica HOM05D005704 ORTHO05D006897 2.0e-19 99.4 64 75.0
SEGI_03430 Sequoiadendron giganteum HOM05D005704 ORTHO05D006897 1.0e-18 97.1 72 66.7
SMO364G0299 Selaginella moellendorffii HOM05D005704 ORTHO05D006897 2.5e-17 92.4 66 60.6
Mapoly0097s0055 Marchantia polymorpha HOM05D005704 ORTHO05D006897 9.4e-17 90.5 67 62.7
Pp3c17_14730 Physcomitrium patens HOM05D005704 ORTHO05D006897 1.2e-16 90.1 68 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2500 Anthoceros agrestis HOM05D005704 ORTHO05D006897 6.1e-16 87.8 76 53.9
CBR_g45388 Chara braunii HOM05D005704 ORTHO05D006897 7.4e-14 80.9 58 58.6
CBR_g8497 Chara braunii HOM05D000019 ORTHO05D006897 1.1e-09 67.0 61 50.8
Cre05.g241450 Chlamydomonas reinhardtii HOM05D001354 ORTHO05D006897 5.5e-09 64.7 58 51.7


User provided reference genes

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