Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-42 176.0 93 100.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-40 168.3 93 95.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.8e-40 168.3 93 95.7
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.8e-40 168.3 93 95.7
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.6e-40 167.9 93 95.7
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.6e-40 167.9 93 95.7
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-35 151.0 87 93.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.3e-34 148.7 93 86.0
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.0e-34 148.3 93 84.9
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-34 148.3 93 84.9
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.0e-34 148.3 93 84.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.9e-34 147.9 93 84.9
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.6e-34 147.1 93 84.9
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.6e-34 147.1 93 84.9
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.6e-34 147.1 93 83.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-33 145.2 93 82.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.5e-33 145.2 93 82.8
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.3e-33 144.8 91 84.6
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 9.5e-33 143.3 93 84.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-32 142.5 93 80.6
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-32 142.5 93 80.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-32 142.5 93 80.6
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.1e-32 142.1 94 81.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 5.2e-31 137.5 93 81.7
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.9e-22 106.7 101 63.4
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-16 87.4 101 57.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 8.1e-16 87.0 89 59.6
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 6.8e-15 84.0 94 59.6
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.2e-14 83.2 94 56.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.6e-14 82.0 95 54.7
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-14 81.6 91 52.7
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 3.4e-14 81.6 91 51.6
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.7e-13 79.3 86 53.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-13 79.0 91 56.0
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 3.8e-13 78.2 100 49.0
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 8.4e-13 77.0 95 51.6
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 8.4e-13 77.0 89 50.6
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.1e-12 76.6 96 55.2
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 4.2e-12 74.7 104 47.1
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-11 73.2 102 48.0
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-11 72.4 102 50.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.1e-11 72.4 75 60.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.1e-11 72.4 96 47.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-11 72.4 96 47.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-11 72.4 96 47.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-11 72.0 95 48.4
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.7e-11 72.0 102 48.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.0e-11 70.9 99 50.5
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.8e-11 70.5 73 57.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-10 70.1 96 46.9
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-10 69.3 73 57.5
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.9e-10 68.2 87 48.3
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.1e-10 67.8 50 74.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.1e-10 67.8 96 49.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.6e-10 67.4 79 54.4
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 6.6e-10 67.4 99 47.5
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.7e-10 67.0 77 54.5
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.7e-10 67.0 95 47.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 8.7e-10 67.0 86 48.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-09 66.6 61 62.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.9e-09 65.9 86 52.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.9e-09 65.9 109 41.3
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.5e-09 65.5 71 54.9
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-09 65.1 102 45.1
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.3e-09 65.1 92 48.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.3e-09 65.1 69 58.0
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.3e-09 65.1 96 47.9
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.3e-09 65.1 49 65.3
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.3e-09 64.7 91 45.1
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.3e-09 64.7 77 50.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.6e-09 64.3 96 45.8
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.6e-09 64.3 80 53.8
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 5.6e-09 64.3 98 45.9
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 5.6e-09 64.3 68 54.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 7.3e-09 63.9 95 46.3
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 7.3e-09 63.9 94 43.6
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.3e-09 63.9 92 43.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.6e-09 63.5 52 65.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 9.6e-09 63.5 69 59.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.6e-09 63.5 92 43.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.3e-08 63.2 91 48.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.3e-08 63.2 90 50.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.3e-08 63.2 100 43.0
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-08 62.8 47 72.3
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.6e-08 62.8 47 72.3
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.6e-08 62.8 64 51.6
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.6e-08 62.8 69 55.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.6e-08 62.8 72 51.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.6e-08 62.8 109 38.5
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.1e-08 62.4 97 46.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.1e-08 62.4 54 63.0
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.1e-08 62.4 71 57.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 2.8e-08 62.0 46 71.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.8e-08 62.0 69 55.1
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.6e-08 61.6 66 56.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.6e-08 61.6 72 52.8
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 4.8e-08 61.2 97 42.3
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.8e-08 61.2 97 44.3
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 4.8e-08 61.2 71 50.7
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-08 61.2 69 55.1
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.8e-08 61.2 69 55.1
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.8e-08 61.2 93 43.0
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 4.8e-08 61.2 70 54.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 4.8e-08 61.2 101 42.6
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.8e-08 61.2 75 57.3
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 6.2e-08 60.8 100 43.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.2e-08 60.8 88 43.2
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 8.1e-08 60.5 97 44.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 8.1e-08 60.5 74 47.3
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.1e-08 60.5 65 58.5
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-07 60.1 66 57.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.4e-07 59.7 93 47.3
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.4e-07 59.7 82 48.8
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-07 59.3 72 50.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.8e-07 59.3 92 47.8
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.8e-07 59.3 103 45.6
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-07 59.3 93 41.9
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.8e-07 59.3 69 52.2
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 63 58.7
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.4e-07 58.9 93 41.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 65 56.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-07 58.9 65 56.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.4e-07 58.9 73 46.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.4e-07 58.9 75 53.3
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.1e-07 58.5 97 41.2
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.1e-07 58.5 77 49.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.0e-07 58.2 103 38.8
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 4.0e-07 58.2 63 54.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 5.3e-07 57.8 88 43.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 5.3e-07 57.8 96 44.8
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.9e-07 57.4 94 42.6
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 6.9e-07 57.4 59 52.5
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.9e-07 57.4 70 48.6
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.9e-07 57.4 102 40.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 6.9e-07 57.4 64 53.1
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 9.0e-07 57.0 93 40.9
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.2e-06 56.6 41 70.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.2e-06 56.6 71 46.5
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.5e-06 56.2 64 51.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.5e-06 56.2 99 40.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.0e-06 55.8 54 53.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.0e-06 55.8 53 56.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.0e-06 55.8 60 51.7
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-06 55.5 66 54.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.6e-06 55.5 86 43.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-06 55.1 70 50.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 3.4e-06 55.1 72 48.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.4e-06 54.7 66 47.0
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 4.4e-06 54.7 101 42.6
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 4.4e-06 54.7 92 44.6
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 5.8e-06 54.3 86 43.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.8e-06 54.3 98 40.8
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.8e-06 54.3 61 50.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.6e-06 53.9 86 44.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 7.6e-06 53.9 68 48.5
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 7.6e-06 53.9 92 42.4
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 9.9e-06 53.5 54 53.7


User provided reference genes

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