Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-53 211.5 111 100.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 9.9e-37 156.8 87 95.4
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 9.9e-37 156.8 87 95.4
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 9.9e-37 156.8 87 95.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-36 156.4 86 96.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.3e-36 156.4 86 96.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 4.2e-35 151.4 87 93.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.2e-35 151.4 87 90.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.1e-35 150.6 87 90.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 9.3e-35 150.2 88 90.9
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-34 149.8 88 89.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-34 148.7 88 89.8
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-34 148.7 88 89.8
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.7e-34 148.7 86 90.7
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 7.9e-34 147.1 86 88.4
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 7.9e-34 147.1 86 88.4
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.0e-33 146.7 87 87.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-33 144.8 88 89.8
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-33 144.4 86 86.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-33 144.4 86 86.0
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 5.1e-33 144.4 86 86.0
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 8.7e-33 143.7 95 81.1
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.3e-31 139.8 88 84.1
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-31 138.7 86 87.2
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.5e-21 106.3 94 63.8
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-17 91.3 89 61.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.7e-17 90.9 96 59.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.1e-16 90.1 97 57.7
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.9e-16 89.4 100 57.0
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.3e-16 88.2 100 58.0
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 9.7e-16 87.0 100 52.0
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 9.7e-16 87.0 100 51.0
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.6e-15 86.3 88 55.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 4.8e-15 84.7 98 58.2
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 8.2e-15 84.0 97 53.6
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-14 83.2 91 58.2
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-14 82.0 96 51.0
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 2.6e-13 79.0 89 51.7
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 1.0e-12 77.0 98 50.0
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-12 76.6 102 52.0
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 3.8e-12 75.1 98 50.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.5e-11 71.2 97 46.4
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-10 69.3 73 54.8
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 2.7e-10 68.9 98 46.9
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.6e-10 68.6 101 46.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.6e-10 68.6 92 47.8
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.6e-10 68.6 92 47.8
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.6e-10 68.6 92 47.8
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.6e-10 68.2 91 48.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-10 68.2 73 54.8
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 69 58.0
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-09 66.6 47 76.6
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 47 76.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 92 46.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 73 54.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 94 51.1
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.3e-09 65.9 69 53.6
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.3e-09 65.9 100 46.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.0e-09 65.5 87 47.1
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 5.1e-09 64.7 94 48.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.1e-09 64.7 107 42.1
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.1e-09 64.7 64 59.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 5.1e-09 64.7 88 46.6
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.1e-09 64.7 72 54.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.7e-09 64.3 80 50.0
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.7e-09 64.3 91 48.4
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.7e-09 64.3 92 50.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.1e-08 63.5 64 60.9
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 86 51.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.9e-08 62.8 108 42.6
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 67 59.7
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 80 47.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 97 47.4
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-08 62.8 90 42.2
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.5e-08 62.4 91 44.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 113 38.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.5e-08 62.4 44 72.7
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 70 55.7
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.5e-08 62.4 90 43.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.3e-08 62.0 73 52.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.3e-08 62.0 68 52.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.3e-08 61.6 107 39.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 5.7e-08 61.2 81 45.7
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.7e-08 61.2 80 48.8
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 5.7e-08 61.2 99 41.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 5.7e-08 61.2 97 44.3
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 5.7e-08 61.2 63 57.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.4e-08 60.8 64 50.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 9.7e-08 60.5 75 49.3
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.7e-08 60.5 64 54.7
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.3e-07 60.1 73 49.3
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.2e-07 59.3 96 41.7
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.2e-07 59.3 108 39.8
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.2e-07 59.3 78 47.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.2e-07 59.3 59 52.5
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 2.2e-07 59.3 45 68.9
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.2e-07 59.3 72 48.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 115 40.9
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-07 59.3 99 41.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.8e-07 58.9 115 37.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.8e-07 58.9 65 56.9
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.8e-07 58.9 67 55.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.8e-07 58.9 82 46.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.8e-07 58.9 103 39.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.7e-07 58.5 106 37.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 4.8e-07 58.2 107 43.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 4.8e-07 58.2 88 42.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 4.8e-07 58.2 79 48.1
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 4.8e-07 58.2 95 44.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.3e-07 57.8 69 47.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.3e-07 57.8 69 52.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.3e-07 57.8 69 52.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 6.3e-07 57.8 86 45.3
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.3e-07 57.8 80 43.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.3e-07 57.8 75 54.7
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 8.2e-07 57.4 67 52.2
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 65 55.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.2e-07 57.4 65 55.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 8.2e-07 57.4 75 45.3
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.1e-06 57.0 73 50.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.4e-06 56.6 88 42.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-06 56.6 88 42.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-06 56.6 92 46.7
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 1.4e-06 56.6 56 55.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 46 63.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-06 56.6 80 46.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-06 56.6 63 52.4
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.8e-06 56.2 79 48.1
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.8e-06 56.2 95 42.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.8e-06 56.2 73 43.8
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-06 56.2 73 46.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.8e-06 56.2 68 50.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 69 49.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.8e-06 56.2 61 50.8
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.4e-06 55.8 78 51.3
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.4e-06 55.8 66 48.5
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 4.1e-06 55.1 96 40.6
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 4.1e-06 55.1 100 40.0
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.3e-06 54.7 89 41.6
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 91 40.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 71 50.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 5.3e-06 54.7 76 43.4
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 66 50.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.9e-06 54.3 88 39.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.9e-06 54.3 108 38.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.1e-06 53.9 100 42.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 9.1e-06 53.9 94 39.4
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 9.1e-06 53.9 74 47.3


User provided reference genes

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