Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08951 Brassica carinata HOM05D007747 ORTHO05D009997 1.2e-35 152.5 72 100.0
BolC4t22310H Brassica oleracea HOM05D007747 ORTHO05D009997 1.6e-32 142.1 72 93.1
A05p05960 Brassica napus HOM05D007747 ORTHO05D009997 4.0e-31 137.5 72 90.3
BraA05t19559Z Brassica rapa HOM05D007747 ORTHO05D009997 4.0e-31 137.5 72 90.3
BcaC02g12161 Brassica carinata HOM05D007747 ORTHO05D009997 2.5e-25 118.2 58 89.7
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 2.4e-23 111.7 74 74.3
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 2.4e-23 111.7 74 74.3
A07p25360 Brassica napus HOM05D007747 ORTHO05D009997 6.9e-23 110.2 74 74.3
BraA07t30181Z Brassica rapa HOM05D007747 ORTHO05D009997 6.9e-23 110.2 74 74.3
C04p06880 Brassica napus HOM05D007747 ORTHO05D009997 1.5e-22 109.0 52 90.4
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 2.2e-21 105.1 74 67.6
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.6e-19 99.0 74 62.2
C06p27230 Brassica napus HOM05D007747 ORTHO05D009997 7.9e-19 96.7 66 71.2
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 1.1e-17 92.8 72 58.3
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 1.5e-17 92.4 72 58.3
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 1.9e-17 92.0 72 58.3
Thhalv10003401m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.1e-15 86.3 71 54.9
BraA07t30180Z Brassica rapa HOM05D007747 ORTHO05D009997 2.6e-14 81.6 74 64.9
BolC4t24705H Brassica oleracea HOM05D007747 ORTHO05D009997 7.7e-14 80.1 71 47.9
BolC6t37892H Brassica oleracea HOM05D007747 ORTHO05D009997 1.0e-13 79.7 74 60.8
A04p01250 Brassica napus HOM05D007747 ORTHO05D009997 1.7e-13 79.0 71 47.9
BraA04t15844Z Brassica rapa HOM05D007747 ORTHO05D009997 1.7e-13 79.0 71 47.9
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.9e-12 75.5 76 52.6
Carub.0002s0802 Capsella rubella HOM05D007747 ORTHO05D009997 1.9e-12 75.5 75 50.7
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 3.2e-12 74.7 78 50.0
A07p25370 Brassica napus HOM05D007747 ORTHO05D009997 4.2e-12 74.3 74 56.8
A07p25380 Brassica napus HOM05D007747 ORTHO05D009997 4.2e-12 74.3 74 56.8
BraA07t30182Z Brassica rapa HOM05D007747 ORTHO05D009997 4.2e-12 74.3 74 56.8
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 5.5e-12 73.9 76 50.0
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 7.2e-12 73.6 78 52.6
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 7.2e-12 73.6 78 52.6
BraA07t30680Z Brassica rapa HOM05D007747 ORTHO05D009997 7.2e-12 73.6 80 48.8
C06p27210 Brassica napus HOM05D007747 ORTHO05D009997 9.4e-12 73.2 74 56.8
C06p27220 Brassica napus HOM05D007747 ORTHO05D009997 9.4e-12 73.2 74 56.8
BolC6t37896H Brassica oleracea HOM05D007747 ORTHO05D009997 9.4e-12 73.2 74 56.8
A07p30430 Brassica napus HOM05D007747 ORTHO05D009997 2.7e-11 71.6 80 47.5
C04p31610 Brassica napus HOM05D007747 ORTHO05D028248 2.7e-11 71.6 78 51.3
C06p27240 Brassica napus HOM05D007747 ORTHO05D009997 2.7e-11 71.6 74 55.4
C06p27260 Brassica napus HOM05D007747 ORTHO05D009997 2.7e-11 71.6 74 55.4
BolC4t24708H Brassica oleracea HOM05D007747 ORTHO05D028248 2.7e-11 71.6 78 51.3
AL2G27660 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 6.1e-11 70.5 72 48.6
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.0e-10 69.7 79 46.8
BolC8t51184H Brassica oleracea HOM05D007747 ORTHO05D009997 1.0e-10 69.7 51 52.9
C06p27250 Brassica napus HOM05D007747 ORTHO05D009997 1.4e-10 69.3 74 54.1
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.4e-10 69.3 74 50.0
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 3.0e-10 68.2 73 49.3
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 5.1e-10 67.4 77 48.1
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 8.8e-10 66.6 75 45.3
Carub.0001s3631 Capsella rubella HOM05D007747 ORTHO05D014853 1.1e-09 66.2 75 46.7
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 3.3e-09 64.7 76 43.4
AT3G43505 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 4.3e-09 64.3 79 43.0
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 4.3e-09 64.3 76 44.7
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 7.4e-09 63.5 75 48.0
AT3G61182 Arabidopsis thaliana HOM05D007747 ORTHO05D014853 1.7e-08 62.4 77 46.8
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 2.2e-08 62.0 75 46.7
Carub.0001s1285 Capsella rubella HOM05D007747 ORTHO05D009997 2.2e-08 62.0 71 46.5
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 2.2e-08 62.0 76 43.4
Carub.0002s1314 Capsella rubella HOM05D007747 ORTHO05D009997 2.8e-08 61.6 78 42.3
AL5G43440 Arabidopsis lyrata HOM05D007747 ORTHO05D014853 3.7e-08 61.2 74 47.3
AL8G18250 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 6.3e-08 60.5 80 46.2
AL8G18260 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 6.3e-08 60.5 80 46.2
A07p30920 Brassica napus HOM05D007747 ORTHO05D009997 6.3e-08 60.5 73 45.2
Thhalv10017941m.g Eutrema salsugineum HOM05D007747 ORTHO05D014853 8.2e-08 60.1 72 41.7
BcaB06g29617 Brassica carinata HOM05D016272 ORTHO05D014853 1.1e-07 59.7 76 43.4
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.4e-07 59.3 76 44.7
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 1.8e-07 58.9 74 41.9
BraA07t30179Z Brassica rapa HOM05D007747 ORTHO05D009997 1.8e-07 58.9 57 57.9
BolC4t23792H Brassica oleracea HOM05D007747 ORTHO05D024130 3.1e-07 58.2 83 42.2
Carub.0005s2785 Capsella rubella HOM05D007747 ORTHO05D014853 3.1e-07 58.2 72 43.1
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 4.1e-07 57.8 74 41.9
A07p18970 Brassica napus HOM05D007747 ORTHO05D024130 4.1e-07 57.8 83 42.2
BraA07t29602Z Brassica rapa HOM05D007747 ORTHO05D024130 4.1e-07 57.8 83 42.2
C04p22980 Brassica napus HOM05D007747 ORTHO05D024130 5.3e-07 57.4 83 42.2
Thhalv10029171m.g Eutrema salsugineum HOM05D007747 ORTHO05D023629 1.2e-06 56.2 73 39.7
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 5.9e-06 53.9 78 39.7
A04p20120 Brassica napus HOM05D016272 ORTHO05D014853 5.9e-06 53.9 73 39.7
BolC4t27109H Brassica oleracea HOM05D016272 ORTHO05D014853 5.9e-06 53.9 73 39.7


User provided reference genes

Program Settings