Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08943 Brassica carinata HOM05D003566 ORTHO05D023212 1.9e-86 322.4 155 100.0
BcaC01g05142 Brassica carinata HOM05D003566 ORTHO05D005288 8.6e-63 243.8 301 48.8
BcaB01g03274 Brassica carinata HOM05D003566 ORTHO05D005288 3.6e-61 238.4 316 46.8
A03p25160 Brassica napus HOM05D003566 ORTHO05D005288 3.6e-61 238.4 316 46.8
BraA03t11716Z Brassica rapa HOM05D003566 ORTHO05D005288 3.6e-61 238.4 316 46.8
C04p71450 Brassica napus HOM05D003566 ORTHO05D005288 8.1e-61 237.3 316 46.5
BraA04t18834Z Brassica rapa HOM05D003566 ORTHO05D005288 8.1e-61 237.3 316 46.5
C03p30000 Brassica napus HOM05D003566 ORTHO05D005288 1.1e-60 236.9 316 46.2
A04p33720 Brassica napus HOM05D003566 ORTHO05D005288 1.8e-60 236.1 316 46.2
BolC4t28653H Brassica oleracea HOM05D003566 ORTHO05D005288 3.1e-60 235.3 316 46.2
Sp4g27320 Schrenkiella parvula HOM05D003566 ORTHO05D005288 4.0e-60 235.0 316 46.2
AL4G44400 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 1.5e-59 233.0 316 45.6
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 1.5e-59 233.0 316 45.6
CARHR140500 Cardamine hirsuta HOM05D003566 ORTHO05D005288 1.5e-59 233.0 316 45.9
Carub.0004s2793 Capsella rubella HOM05D003566 ORTHO05D005288 7.5e-59 230.7 316 45.6
Thhalv10001404m.g Eutrema salsugineum HOM05D003566 ORTHO05D005288 9.9e-59 230.3 316 45.6
AT2G45300 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 1.3e-58 229.9 316 45.3
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 2.9e-58 228.8 316 44.9
THA.LOC104817242 Tarenaya hassleriana HOM05D003566 ORTHO05D005288 3.7e-58 228.4 316 44.9
BolC3t15347H Brassica oleracea HOM05D003566 ORTHO05D005288 4.1e-57 224.9 339 43.4
Sp5g02490 Schrenkiella parvula HOM05D003566 ORTHO05D005288 5.4e-57 224.6 316 44.6
Aa31LG10G15010 Aethionema arabicum HOM05D003566 ORTHO05D005288 7.8e-56 220.7 316 44.3
EL10Ac1g00874 Beta vulgaris HOM05D003566 ORTHO05D005288 2.3e-55 219.2 316 43.7
TAR374G0275 Trochodendron aralioides HOM05D003566 ORTHO05D005288 3.0e-55 218.8 316 43.4
CARHR171150 Cardamine hirsuta HOM05D003566 ORTHO05D005288 6.6e-55 217.6 316 43.7
Lsat_1_v5_gn_7_9680 Lactuca sativa HOM05D003566 ORTHO05D005288 8.6e-55 217.2 316 43.4
GSVIVG01027673001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.9e-54 216.1 316 43.4
Hma1.2p1_0301F.1_g118610 Hydrangea macrophylla HOM05D003566 ORTHO05D005288 2.5e-54 215.7 316 43.0
Lj7C530T15 Lonicera japonica HOM05D003566 ORTHO05D005288 2.5e-54 215.7 306 43.8
Ah.05g174400 Amaranthus hybridus HOM05D003566 ORTHO05D005288 3.3e-54 215.3 316 42.7
HanXRQChr16g0520001 Helianthus annuus HOM05D003566 ORTHO05D005288 5.6e-54 214.5 316 43.0
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 5.6e-54 214.5 316 42.7
MBI04_g30227_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D005288 5.6e-54 214.5 316 42.7
COL.COLO4_12529 Corchorus olitorius HOM05D003566 ORTHO05D005288 7.3e-54 214.2 315 42.5
Glyma.01G139600 Glycine max HOM05D003566 ORTHO05D005288 7.3e-54 214.2 316 42.7
AUR62013650 Chenopodium quinoa HOM05D003566 ORTHO05D005288 9.5e-54 213.8 316 42.7
Lj9A568G56 Lonicera japonica HOM05D003566 ORTHO05D005288 9.5e-54 213.8 316 42.7
VMungo0331G1999 Vigna mungo HOM05D003566 ORTHO05D005288 1.2e-53 213.4 316 42.4
Ciclev10019734m.g Citrus clementina HOM05D003566 ORTHO05D005288 2.1e-53 212.6 316 42.1
Gorai.008G113600 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.1e-53 212.6 316 42.4
PSO782G1824 Papaver somniferum HOM05D003566 ORTHO05D005288 2.1e-53 212.6 316 42.1
PSO832G3659 Papaver somniferum HOM05D003566 ORTHO05D005288 2.1e-53 212.6 316 42.1
Hund17028 Selenicereus undatus HOM05D003566 ORTHO05D005288 2.1e-53 212.6 316 42.7
Ca_19954_v3 Cicer arietinum L. HOM05D003566 ORTHO05D005288 2.8e-53 212.2 316 42.4
Duzib133G0428 Durio zibethinus HOM05D003566 ORTHO05D005288 2.8e-53 212.2 316 42.1
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 2.8e-53 212.2 316 42.1
Solyc01g091190.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 2.8e-53 212.2 316 42.4
PGSC0003DMG400026006 Solanum tuberosum HOM05D003566 ORTHO05D005288 2.8e-53 212.2 316 42.4
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 3.6e-53 211.8 316 42.7
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 3.6e-53 211.8 316 42.1
Glyma.03G027400 Glycine max HOM05D003566 ORTHO05D005288 4.7e-53 211.5 316 42.7
Gohir.D07G152400 Gossypium hirsutum HOM05D003566 ORTHO05D005288 4.7e-53 211.5 316 41.8
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 4.7e-53 211.5 316 42.1
Thecc.01G378400 Theobroma cacao HOM05D003566 ORTHO05D005288 4.7e-53 211.5 316 42.1
Gohir.D12G104500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 6.2e-53 211.1 316 42.1
Duzib138G1163 Durio zibethinus HOM05D003566 ORTHO05D005288 8.1e-53 210.7 316 41.8
Duzib138G1849 Durio zibethinus HOM05D003566 ORTHO05D005288 8.1e-53 210.7 316 41.8
SalBow5G0834 Salvia bowleyana HOM05D003566 ORTHO05D005288 8.1e-53 210.7 316 42.4
Sopen01g036940 Solanum pennellii HOM05D003566 ORTHO05D005288 8.1e-53 210.7 316 42.1
Actinidia12250 Actinidia chinensis HOM05D003566 ORTHO05D005288 1.1e-52 210.3 316 42.4
AUR62004195 Chenopodium quinoa HOM05D003566 ORTHO05D005288 1.1e-52 210.3 316 42.4
Gohir.A07G146300 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.1e-52 210.3 316 41.8
Gohir.A12G101500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.1e-52 210.3 316 42.1
HPP92_020661 Vanilla planifolia HOM05D003566 ORTHO05D005288 1.1e-52 210.3 312 42.6
arahy.Tifrunner.gnm1.ann1.9A4JNA Arachis hypogaea HOM05D003566 ORTHO05D005288 1.4e-52 209.9 316 42.4
arahy.Tifrunner.gnm1.ann1.VTP8RR Arachis hypogaea HOM05D003566 ORTHO05D005288 1.4e-52 209.9 316 42.4
Medtr4g024620 Medicago truncatula HOM05D003566 ORTHO05D005288 1.4e-52 209.9 316 42.1
Psat0s4330g0080 Pisum sativum HOM05D003566 ORTHO05D005288 1.4e-52 209.9 316 42.1
ECA236G4962 Erigeron canadensis HOM05D003566 ORTHO05D005288 2.4e-52 209.1 316 42.1
Gorai.001G174400 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.4e-52 209.1 316 41.5
Phvul.010G082200 Phaseolus vulgaris HOM05D003566 ORTHO05D005288 2.4e-52 209.1 316 42.1
TPR.G31328 Trifolium pratense HOM05D003566 ORTHO05D005288 2.4e-52 209.1 315 42.2
Dinv43695 Davidia involucrata HOM05D003566 ORTHO05D005288 3.1e-52 208.8 316 42.4
Rhsim07G0028700 Rhododendron simsii HOM05D003566 ORTHO05D005288 4.0e-52 208.4 316 41.8
vmacro13413 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 4.0e-52 208.4 316 41.8
unitig_26.g8900 Utricularia gibba HOM05D003566 ORTHO05D005288 5.2e-52 208.0 316 41.8
Cpa.g.sc18.106 Carica papaya HOM05D003566 ORTHO05D005288 8.9e-52 207.2 316 42.1
ClCG05G002340 Citrullus lanatus HOM05D003566 ORTHO05D005288 8.9e-52 207.2 316 42.1
CsaV3_3G009780 Cucumis sativus L. HOM05D003566 ORTHO05D005288 8.9e-52 207.2 316 42.1
Sabra14G0047900 Salix brachista HOM05D003566 ORTHO05D005288 8.9e-52 207.2 316 42.1
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 1.2e-51 206.8 316 41.1
HanXRQChr04g0122731 Helianthus annuus HOM05D003566 ORTHO05D005288 1.2e-51 206.8 316 41.8
Rhsim01G0149300 Rhododendron simsii HOM05D003566 ORTHO05D005288 1.2e-51 206.8 316 41.8
CAN.G388.31 Capsicum annuum HOM05D003566 ORTHO05D005288 1.5e-51 206.5 316 41.8
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 1.5e-51 206.5 316 41.8
Oeu011923.1 Olea europaea HOM05D003566 ORTHO05D005288 1.5e-51 206.5 316 42.1
Oeu055501.1 Olea europaea HOM05D003566 ORTHO05D005288 1.5e-51 206.5 316 42.1
Prupe.2G143700 Prunus persica HOM05D003566 ORTHO05D005288 1.5e-51 206.5 315 41.9
vmacro21022 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 1.5e-51 206.5 316 41.8
MD07G1119600 Malus domestica HOM05D003566 ORTHO05D005288 2.0e-51 206.1 316 41.8
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 2.6e-51 205.7 316 41.8
Cc02_g24040 Coffea canephora HOM05D003566 ORTHO05D005288 2.6e-51 205.7 316 41.8
Dinv32368 Davidia involucrata HOM05D003566 ORTHO05D005288 2.6e-51 205.7 316 41.5
Lsat_1_v5_gn_4_43461 Lactuca sativa HOM05D003566 ORTHO05D005288 2.6e-51 205.7 315 41.6
MELO3C006199.2 Cucumis melo HOM05D003566 ORTHO05D005288 3.4e-51 205.3 316 41.8
Lj3g0026165 Lotus japonicus HOM05D003566 ORTHO05D005288 3.4e-51 205.3 316 41.8
Nitab4.5_0000457g0110 Nicotiana tabacum HOM05D003566 ORTHO05D005288 3.4e-51 205.3 316 41.5
RcHm_v2.0_Chr1g0349971 Rosa chinensis HOM05D003566 ORTHO05D005288 3.4e-51 205.3 316 41.8
FvH4_7g11530 Fragaria vesca HOM05D003566 ORTHO05D005288 4.4e-51 204.9 316 41.5
FAN03G0287 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.4e-51 204.9 316 41.5
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 4.4e-51 204.9 316 42.1
MSTRG.17176 Avicennia marina HOM05D003566 ORTHO05D005288 5.8e-51 204.5 316 41.1
MSTRG.4899 Avicennia marina HOM05D003566 ORTHO05D005288 5.8e-51 204.5 316 41.1
CANSAT56G0647 Cannabis sativa HOM05D003566 ORTHO05D005288 5.8e-51 204.5 316 41.8
CANSAT56G3470 Cannabis sativa HOM05D003566 ORTHO05D005288 5.8e-51 204.5 316 41.8
Sed0010249 Sechium edule HOM05D003566 ORTHO05D005288 7.6e-51 204.1 316 41.5
Potri.002G146400 Populus trichocarpa HOM05D003566 ORTHO05D005288 9.9e-51 203.8 316 41.5
FAN06G2304 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.7e-50 203.0 316 41.1
FAN06G3189 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.7e-50 203.0 316 41.1
MD02G1207300 Malus domestica HOM05D003566 ORTHO05D005288 2.2e-50 202.6 316 41.5
Nitab4.5_0005272g0040 Nicotiana tabacum HOM05D003566 ORTHO05D005288 2.2e-50 202.6 328 40.2
Sabra02G0114000 Salix brachista HOM05D003566 ORTHO05D005288 2.2e-50 202.6 316 41.5
Actinidia12680 Actinidia chinensis HOM05D003566 ORTHO05D005288 2.9e-50 202.2 313 41.9
FAN01G1013 Fragaria x ananassa HOM05D003566 ORTHO05D005288 3.8e-50 201.8 314 41.1
Nitab4.5_0003912g0050 Nicotiana tabacum HOM05D003566 ORTHO05D005288 3.8e-50 201.8 316 40.8
TWI59G0119 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 3.8e-50 201.8 316 41.5
Zm00001eb378020 Zea mays HOM05D003566 ORTHO05D005288 3.8e-50 201.8 316 41.1
FAN10G2501 Fragaria x ananassa HOM05D003566 ORTHO05D005288 4.9e-50 201.4 316 40.8
Solyc05g050980.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 4.9e-50 201.4 316 40.8
Peaxi162Scf00013g03114 Petunia axillaris HOM05D003566 ORTHO05D005288 6.4e-50 201.1 316 40.8
Sopen05g029450 Solanum pennellii HOM05D003566 ORTHO05D005288 6.4e-50 201.1 316 40.5
QL08p052721 Quercus lobata HOM05D003566 ORTHO05D005288 8.4e-50 200.7 316 40.8
Peaxi162Scf00959g00022 Petunia axillaris HOM05D003566 ORTHO05D005288 1.1e-49 200.3 316 40.5
CiPaw.01G263300 Carya illinoinensis HOM05D003566 ORTHO05D005288 1.4e-49 199.9 316 40.5
CDE12G0626 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 1.4e-49 199.9 316 39.9
GSVIVG01027670001 Vitis vinifera HOM05D003566 ORTHO05D005288 3.2e-49 198.7 302 42.4
CDE04G0743 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 4.2e-49 198.4 316 39.6
Os06g0133900 Oryza sativa ssp. japonica HOM05D003566 ORTHO05D005288 4.2e-49 198.4 316 40.8
PGSC0003DMG400007018 Solanum tuberosum HOM05D003566 ORTHO05D005288 4.2e-49 198.4 316 40.5
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 7.1e-49 197.6 316 39.6
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 7.1e-49 197.6 316 40.2
unitig_76.g29084 Utricularia gibba HOM05D003566 ORTHO05D005288 1.2e-48 196.8 339 39.2
PGR004G2250 Punica granatum HOM05D003566 ORTHO05D005288 1.6e-48 196.4 316 39.6
Potri.014G068300 Populus trichocarpa HOM05D003566 ORTHO05D005288 2.1e-48 196.1 316 40.8
SMO137G0336 Selaginella moellendorffii HOM05D003566 ORTHO05D005288 4.6e-48 194.9 316 38.9
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 3.0e-47 192.2 316 39.6
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 5.1e-47 191.4 309 40.5
Gorai.008G113800 Gossypium raimondii HOM05D003566 ORTHO05D005288 1.1e-46 190.3 266 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2264 Anthoceros agrestis HOM05D003566 ORTHO05D005288 3.3e-46 188.7 316 38.6
TWI14G0817 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 4.8e-45 184.9 344 37.8
SGA_v2.0_scaffold95G28906 Striga asiatica HOM05D003566 ORTHO05D005288 4.0e-44 181.8 310 38.4
CBR_g26047 Chara braunii HOM05D003566 ORTHO05D005288 8.4e-42 174.1 316 35.8
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 2.7e-40 169.1 116 75.0
Nitab4.5_0001329g0120 Nicotiana tabacum HOM05D003566 ORTHO05D005288 2.7e-40 169.1 93 86.0
Pp3c23_11380 Physcomitrium patens HOM05D003566 ORTHO05D005288 5.1e-39 164.9 317 34.7
SGA_v2.0_scaffold153G36998 Striga asiatica HOM05D003566 ORTHO05D005288 5.1e-39 164.9 300 38.0
Pp3c20_17090 Physcomitrium patens HOM05D003566 ORTHO05D005288 2.8e-37 159.1 324 34.6
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 3.6e-37 158.7 90 86.7
BraA05t19503Z Brassica rapa HOM05D003566 ORTHO05D005288 3.6e-37 158.7 90 86.7
unitig_749.g14377 Utricularia gibba HOM05D003566 ORTHO05D023212 4.8e-37 158.3 116 69.8
PSO478G4413 Papaver somniferum HOM05D003566 ORTHO05D005288 3.1e-36 155.6 90 82.2
Gohir.D12G104550 Gossypium hirsutum HOM05D003566 ORTHO05D005288 2.0e-35 152.9 266 37.6
Mapoly0034s0104 Marchantia polymorpha HOM05D003566 ORTHO05D005288 2.0e-35 152.9 129 60.5
AUR62038008 Chenopodium quinoa HOM05D003566 ORTHO05D018971 5.8e-35 151.4 218 43.6
Cre03.g181300 Chlamydomonas reinhardtii HOM05D003566 ORTHO05D005288 1.2e-32 143.7 324 34.0
MCO12G366 Micromonas commoda HOM05D003566 ORTHO05D005288 3.0e-31 139.0 124 61.3
PRCOL_00003336 Prasinoderma coloniale HOM05D003566 ORTHO05D005288 4.8e-29 131.7 316 31.6
MD10G1038600 Malus domestica HOM05D003566 ORTHO05D023212 1.1e-28 130.6 73 83.6
Sed0009137 Sechium edule HOM05D003566 ORTHO05D005288 1.2e-27 127.1 274 34.7
Migut.B01621 Erythranthe guttata HOM05D003566 ORTHO05D005288 1.2e-24 117.1 159 44.7
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 1.2e-24 117.1 60 90.0
FAN10G1568 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.3e-23 113.6 159 44.7
unitig_749.g14378 Utricularia gibba HOM05D003566 ORTHO05D005288 6.7e-23 111.3 60 86.7
MBI04_g40966_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D018971 2.5e-22 109.4 58 89.7
Atru.chr5.291 Acer truncatum HOM05D003566 ORTHO05D023212 4.3e-22 108.6 63 84.1
Psat0s2394g0040 Pisum sativum HOM05D003566 ORTHO05D018971 2.8e-21 105.9 65 76.9
Gorai.008G113700 Gossypium raimondii HOM05D003566 ORTHO05D005288 3.7e-21 105.5 120 50.8
Atru.chr5.290 Acer truncatum HOM05D003566 ORTHO05D005288 1.4e-20 103.6 150 41.3
PSO832G0847 Papaver somniferum HOM05D003566 ORTHO05D018971 2.0e-19 99.8 54 83.3
Psat7g227000 Pisum sativum HOM05D003566 ORTHO05D018971 6.5e-18 94.7 57 78.9
PSO832G1516 Papaver somniferum HOM05D002084 ORTHO05D002031 1.2e-16 90.5 55 80.0
MD02G1207400 Malus domestica HOM05D003566 ORTHO05D018971 1.3e-15 87.0 63 66.7
MD14G1236200 Malus domestica HOM05D003566 ORTHO05D018971 1.2e-11 73.9 47 80.9
CAN.G222.147 Capsicum annuum HOM05D001134 ORTHO05D001035 7.7e-11 71.2 63 57.1
Actinidia31398 Actinidia chinensis HOM05D003566 ORTHO05D005288 2.9e-10 69.3 44 70.5
MD02G1207500 Malus domestica HOM05D003566 ORTHO05D023212 5.0e-10 68.6 36 80.6
GSVIVG01038750001 Vitis vinifera HOM05D003566 ORTHO05D000085 2.5e-09 66.2 41 75.6
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.8e-07 60.1 94 39.4
ECA236G0363 Erigeron canadensis HOM05D003566 ORTHO05D018971 1.8e-07 60.1 38 73.7


User provided reference genes

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