Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 2.8e-117 425.2 210 100.0
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 6.6e-50 201.4 177 63.8
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 3.7e-40 169.1 85 95.3
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 7.6e-38 161.4 84 92.9
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 1.4e-36 157.1 80 93.8
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 1.4e-36 157.1 80 93.8
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 1.4e-36 157.1 80 93.8
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 2.5e-36 156.4 80 92.5
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 2.5e-36 156.4 80 92.5
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 3.2e-36 156.0 80 92.5
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 9.3e-36 154.5 79 92.4
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 9.3e-36 154.5 79 92.4
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 9.3e-36 154.5 79 92.4
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 1.2e-35 154.1 79 92.4
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 2.1e-35 153.3 82 90.2
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 3.5e-35 152.5 79 91.1
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 4.8e-32 142.1 80 82.5
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 6.2e-32 141.7 80 81.2
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 1.4e-31 140.6 81 76.5
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 1.4e-31 140.6 81 76.5
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.2e-30 137.5 102 61.8
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 2.6e-30 136.3 103 62.1
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 3.4e-30 136.0 80 75.0
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 4.5e-30 135.6 102 64.7
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 7.6e-30 134.8 102 61.8
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 7.6e-30 134.8 102 62.7
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 1.0e-29 134.4 102 61.8
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 1.3e-29 134.0 80 75.0
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 1.3e-29 134.0 80 72.5
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 1.3e-29 134.0 102 62.7
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 1.7e-29 133.7 80 73.8
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 1.7e-29 133.7 79 73.4
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 1.7e-29 133.7 80 75.0
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 2.2e-29 133.3 80 72.5
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 2.9e-29 132.9 102 63.7
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 2.9e-29 132.9 102 62.7
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 2.9e-29 132.9 102 60.8
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 2.9e-29 132.9 102 61.8
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 2.9e-29 132.9 102 61.8
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 2.9e-29 132.9 80 73.8
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 3.8e-29 132.5 102 60.8
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 8.4e-29 131.3 102 60.8
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 8.4e-29 131.3 79 72.2
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 8.4e-29 131.3 79 70.9
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 8.4e-29 131.3 80 72.5
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 8.4e-29 131.3 102 57.8
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 8.4e-29 131.3 80 72.5
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 8.4e-29 131.3 80 71.2
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 1.1e-28 131.0 79 72.2
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 1.1e-28 131.0 79 72.2
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 1.1e-28 131.0 80 71.2
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 1.1e-28 131.0 80 70.0
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 1.4e-28 130.6 80 70.0
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 1.4e-28 130.6 102 61.8
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 1.4e-28 130.6 80 71.2
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 1.4e-28 130.6 80 71.2
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 1.4e-28 130.6 80 73.8
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 1.9e-28 130.2 80 70.0
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 1.9e-28 130.2 79 73.4
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 2.5e-28 129.8 80 71.2
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 2.5e-28 129.8 80 72.5
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 3.2e-28 129.4 102 57.8
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 3.2e-28 129.4 80 70.0
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 3.2e-28 129.4 102 60.8
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 4.2e-28 129.0 80 71.2
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 4.2e-28 129.0 80 71.2
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 5.5e-28 128.6 79 69.6
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 5.5e-28 128.6 78 70.5
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 5.5e-28 128.6 102 58.8
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 5.5e-28 128.6 102 60.8
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 7.1e-28 128.3 80 70.0
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 7.1e-28 128.3 80 70.0
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 9.3e-28 127.9 80 71.2
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 9.3e-28 127.9 79 69.6
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 9.3e-28 127.9 80 70.0
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 1.2e-27 127.5 80 68.8
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 1.2e-27 127.5 80 70.0
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 1.2e-27 127.5 102 58.8
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 1.6e-27 127.1 80 70.0
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 2.1e-27 126.7 79 68.4
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 2.1e-27 126.7 79 70.9
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 3.5e-27 125.9 85 68.2
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 3.5e-27 125.9 79 69.6
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 6.1e-27 125.2 79 67.1
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 1.0e-26 124.4 78 69.2
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.0e-26 124.4 79 65.8
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.0e-26 124.4 79 65.8
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.0e-26 124.4 79 65.8
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 1.0e-26 124.4 79 69.6
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 1.8e-26 123.6 78 69.2
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 1.8e-26 123.6 83 61.4
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 1.8e-26 123.6 79 67.1
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 2.3e-26 123.2 102 57.8
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 2.3e-26 123.2 79 67.1
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 8.7e-26 121.3 102 56.9
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 8.7e-26 121.3 80 63.8
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 1.9e-25 120.2 79 65.8
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 2.5e-25 119.8 78 66.7
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 2.5e-25 119.8 78 66.7
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 3.3e-25 119.4 79 64.6
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 1.6e-24 117.1 107 53.3
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 2.2e-24 116.7 98 56.1
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 3.7e-24 115.9 81 64.2
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 3.1e-23 112.8 84 63.1
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 4.2e-20 102.4 81 60.5
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 1.8e-18 97.1 80 53.8
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 6.7e-18 95.1 78 55.1
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 2.0e-17 93.6 57 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 4.3e-17 92.4 104 44.2
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 2.4e-15 86.7 80 46.2
BcaB06g26644 Brassica carinata HOM05D006432 ORTHO05D094143 5.3e-15 85.5 43 90.7
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 1.7e-13 80.5 68 54.4
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 7.2e-12 75.1 42 71.4
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 5.1e-10 68.9 114 33.3
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 2.8e-08 63.2 43 65.1
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 1.8e-07 60.5 43 60.5
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 1.5e-06 57.4 28 82.1


User provided reference genes

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