Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 4.4e-55 217.6 102 100.0
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 1.1e-42 176.4 102 82.4
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 3.2e-42 174.9 102 81.4
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 3.2e-42 174.9 102 81.4
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 2.3e-40 168.7 102 79.4
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 3.0e-40 168.3 97 79.4
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 1.2e-39 166.4 103 78.6
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 5.7e-39 164.1 103 78.6
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 1.7e-38 162.5 103 77.7
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 3.7e-38 161.4 101 78.2
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 4.8e-38 161.0 102 72.5
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 1.1e-37 159.8 103 74.8
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 1.2e-36 156.4 99 71.7
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.7e-35 152.5 100 67.0
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 1.7e-35 152.5 92 75.0
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.1e-34 149.8 95 73.7
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.5e-34 149.4 92 69.6
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.2e-34 148.3 90 73.3
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.2e-33 146.4 93 75.3
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 2.1e-33 145.6 93 72.0
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-33 145.6 93 72.0
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-33 145.6 93 72.0
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 2.7e-33 145.2 95 68.4
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 2.7e-33 145.2 92 69.6
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 3.6e-33 144.8 92 70.7
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 6.1e-33 144.1 92 72.8
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.4e-32 142.9 95 68.4
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-32 142.5 99 68.7
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 2.3e-32 142.1 90 71.1
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 2.3e-32 142.1 101 66.3
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 3.0e-32 141.7 87 69.0
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 4.0e-32 141.4 106 67.0
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 6.8e-32 140.6 90 68.9
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 8.8e-32 140.2 90 68.9
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 8.8e-32 140.2 90 68.9
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 1.2e-31 139.8 103 64.1
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 1.2e-31 139.8 103 64.1
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 2.6e-31 138.7 90 68.9
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.4e-31 138.3 90 68.9
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 7.5e-31 137.1 103 66.0
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 7.5e-31 137.1 103 66.0
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 9.8e-31 136.7 103 67.0
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 2.2e-30 135.6 92 68.5
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 3.7e-30 134.8 91 69.2
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 8.3e-30 133.7 90 66.7
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 8.3e-30 133.7 91 70.3
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 8.3e-30 133.7 103 66.0
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 8.3e-30 133.7 91 70.3
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 8.3e-30 133.7 91 70.3
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.1e-29 133.3 75 70.7
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 1.1e-29 133.3 92 65.2
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 1.1e-29 133.3 92 65.2
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.4e-29 132.9 90 67.8
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 1.8e-29 132.5 97 58.8
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.4e-29 132.1 90 66.7
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 5.4e-29 131.0 108 63.0
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 7.0e-29 130.6 87 67.8
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-28 129.0 91 69.2
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 3.5e-28 128.3 76 69.7
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 4.5e-28 127.9 99 62.6
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 4.5e-28 127.9 79 68.4
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.5e-28 127.9 92 64.1
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 1.0e-27 126.7 97 63.9
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.3e-27 126.3 97 62.9
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 1.3e-27 126.3 98 59.2
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 5.0e-27 124.4 93 58.1
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.5e-26 122.9 95 60.0
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.5e-26 122.1 92 63.0
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 7.2e-26 120.6 76 68.4
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.8e-25 118.6 93 60.2
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 8.0e-25 117.1 98 57.1
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.8e-24 115.9 92 59.8
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 1.5e-23 112.8 80 62.5
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 3.4e-23 111.7 70 71.4
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 4.4e-23 111.3 66 69.7
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.9e-22 107.8 90 57.8
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.3e-22 107.5 95 50.5
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 6.3e-22 107.5 92 51.1
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 9.2e-21 103.6 71 71.8
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 5.9e-20 100.9 91 53.8
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 2.8e-17 92.0 87 51.7
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 4.7e-17 91.3 88 51.1
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 1.4e-16 89.7 102 46.1
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.0e-16 88.6 89 50.6
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 5.2e-16 87.8 87 49.4
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 1.2e-15 86.7 87 50.6
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 2.6e-15 85.5 90 48.9
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 4.4e-15 84.7 88 50.0
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 4.4e-15 84.7 88 50.0
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 4.4e-15 84.7 88 50.0
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 5.8e-15 84.3 88 50.0
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 5.8e-15 84.3 88 50.0
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 9.8e-15 83.6 91 44.0
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 1.3e-14 83.2 86 48.8
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 2.9e-14 82.0 88 50.0
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.9e-14 81.3 93 47.3
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 2.4e-13 79.0 94 50.0
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 2.4e-13 79.0 94 50.0
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 3.2e-13 78.6 90 46.7
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 7.0e-13 77.4 93 47.3
Thhalv10001701m.g Eutrema salsugineum HOM05D007394 ORTHO05D032247 2.0e-12 75.9 87 46.0
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 3.5e-12 75.1 92 46.7
C04p70470 Brassica napus HOM05D007394 ORTHO05D009234 1.3e-11 73.2 94 45.7
A04p32760 Brassica napus HOM05D007394 ORTHO05D009234 3.0e-11 72.0 94 44.7
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 3.9e-11 71.6 88 40.9
A04p02110 Brassica napus HOM05D014590 ORTHO05D017585 2.5e-10 68.9 93 45.2
BraA04t15937Z Brassica rapa HOM05D014590 ORTHO05D017585 2.5e-10 68.9 93 45.2
BcaC02g10070 Brassica carinata HOM05D014590 ORTHO05D017585 3.3e-10 68.6 89 43.8
BcaC02g07167 Brassica carinata HOM05D007394 ORTHO05D032247 9.5e-10 67.0 88 38.6
Carub.0005s2631 Capsella rubella HOM05D014590 ORTHO05D017585 3.6e-09 65.1 90 41.1
C04p33170 Brassica napus HOM05D014590 ORTHO05D017585 2.9e-06 55.5 80 43.8
BolC4t24876H Brassica oleracea HOM05D014590 ORTHO05D017585 2.9e-06 55.5 80 43.8


User provided reference genes

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