Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08922 Brassica carinata HOM05D007553 ORTHO05D009123 2.4e-49 198.7 116 100.0
A05p04200 Brassica napus HOM05D007553 ORTHO05D009123 4.7e-37 157.9 116 87.1
BraA05t19405Z Brassica rapa HOM05D007553 ORTHO05D009123 4.7e-37 157.9 116 87.1
BcaC02g12342 Brassica carinata HOM05D007553 ORTHO05D009123 1.8e-36 156.0 116 86.2
C04p04960 Brassica napus HOM05D007553 ORTHO05D009123 1.8e-36 156.0 116 86.2
BolC4t22127H Brassica oleracea HOM05D007553 ORTHO05D009123 1.8e-36 156.0 116 86.2
Thhalv10001780m.g Eutrema salsugineum HOM05D007553 ORTHO05D009123 1.4e-28 129.8 116 74.1
Sp4g26160 Schrenkiella parvula HOM05D007553 ORTHO05D009123 6.7e-28 127.5 116 74.1
BcaC01g05187 Brassica carinata HOM05D007553 ORTHO05D009123 1.7e-26 122.9 117 70.9
C03p29410 Brassica napus HOM05D007553 ORTHO05D009123 1.7e-26 122.9 116 71.6
BolC3t15289H Brassica oleracea HOM05D007553 ORTHO05D009123 1.7e-26 122.9 116 71.6
A03p24670 Brassica napus HOM05D007553 ORTHO05D009123 8.2e-26 120.6 117 70.1
AL4G42960 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 2.4e-25 119.0 118 70.3
CARHR139250 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.7e-23 112.8 106 73.6
BraA03t11673Z Brassica rapa HOM05D007553 ORTHO05D009123 2.2e-23 112.5 109 69.7
AT2G44080 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 6.5e-23 110.9 114 69.3
BcaB01g03340 Brassica carinata HOM05D007553 ORTHO05D009123 1.9e-22 109.4 101 73.3
BcaB01g03341 Brassica carinata HOM05D007553 ORTHO05D009123 1.9e-22 109.4 101 73.3
Carub.0004s2663 Capsella rubella HOM05D007553 ORTHO05D009123 4.7e-21 104.8 113 66.4
BcaB01g03331 Brassica carinata HOM05D007553 ORTHO05D009123 1.0e-20 103.6 109 70.6
AL5G42060 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 1.1e-17 93.6 117 59.0
C06p26460 Brassica napus HOM05D007553 ORTHO05D009123 1.1e-17 93.6 112 58.9
AT3G59900 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 1.4e-17 93.2 116 57.8
CARHR170230 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.4e-17 93.2 116 59.5
THA.LOC104804341 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 2.4e-17 92.4 119 55.5
A07p24890 Brassica napus HOM05D007553 ORTHO05D009123 5.3e-17 91.3 112 55.4
BcaB06g29355 Brassica carinata HOM05D007553 ORTHO05D009123 2.0e-16 89.4 120 58.3
A09p52250 Brassica napus HOM05D007553 ORTHO05D009123 1.3e-15 86.7 116 58.6
BraA09t40654Z Brassica rapa HOM05D007553 ORTHO05D009123 1.3e-15 86.7 116 58.6
THA.LOC104802351 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 2.9e-15 85.5 118 50.8
BcaC07g40396 Brassica carinata HOM05D007553 ORTHO05D009123 3.8e-15 85.1 112 56.2
BcaC08g45014 Brassica carinata HOM05D007553 ORTHO05D009123 1.5e-14 83.2 112 54.5
BolC6t37809H Brassica oleracea HOM05D007553 ORTHO05D009123 1.5e-14 83.2 112 54.5
BraA07t30131Z Brassica rapa HOM05D007553 ORTHO05D009123 7.2e-14 80.9 112 52.7
PGR042G0659 Punica granatum HOM05D007553 ORTHO05D009123 1.0e-12 77.0 90 61.1
BcaC07g40546 Brassica carinata HOM05D007553 ORTHO05D009123 4.0e-12 75.1 101 54.5
BolC8t51089H Brassica oleracea HOM05D007553 ORTHO05D009123 4.0e-12 75.1 101 54.5
C04p70880 Brassica napus HOM05D007553 ORTHO05D009123 6.8e-12 74.3 119 54.6
Carub.0005s2664 Capsella rubella HOM05D007553 ORTHO05D009123 6.8e-12 74.3 112 53.6
BcaB02g07440 Brassica carinata HOM05D007553 ORTHO05D009123 8.8e-12 73.9 111 53.2
ECA248G0707 Erigeron canadensis HOM05D007553 ORTHO05D009123 4.4e-11 71.6 94 59.6
BraA04t18778Z Brassica rapa HOM05D007553 ORTHO05D009123 2.2e-10 69.3 118 52.5
A04p33190 Brassica napus HOM05D007553 ORTHO05D009123 2.8e-10 68.9 119 52.1
Cpa.g.sc9.240 Carica papaya HOM05D007553 ORTHO05D009123 3.7e-10 68.6 99 56.6
QL10p064915 Quercus lobata HOM05D007553 ORTHO05D009123 3.7e-10 68.6 107 50.5
Manes.01G009500 Manihot esculenta HOM05D007553 ORTHO05D009123 8.3e-10 67.4 91 52.7
BcaC02g07136 Brassica carinata HOM05D007553 ORTHO05D009123 1.4e-09 66.6 120 50.8
BolC4t28589H Brassica oleracea HOM05D007553 ORTHO05D009123 1.4e-09 66.6 120 50.8
SHI01179 Sapria himalayana HOM05D007553 ORTHO05D009123 3.1e-09 65.5 85 57.6
Sc13g0008070 Simmondsia chinensis HOM05D007553 ORTHO05D009123 4.1e-09 65.1 93 50.5
TWI15G0237 Tripterygium wilfordii HOM05D007553 ORTHO05D009123 1.6e-08 63.2 91 57.1
Aa31LG10G14150 Aethionema arabicum HOM05D007553 ORTHO05D009123 5.9e-08 61.2 97 51.5
AUR62002498 Chenopodium quinoa HOM05D007553 ORTHO05D009123 7.7e-08 60.8 86 57.0
Nn1g09400 Nelumbo nucifera HOM05D007553 ORTHO05D009123 7.7e-08 60.8 71 66.2
Sc19g0002450 Simmondsia chinensis HOM05D007553 ORTHO05D009123 1.0e-07 60.5 105 42.9
Ciclev10022861m.g Citrus clementina HOM05D007553 ORTHO05D009123 1.7e-07 59.7 96 52.1
TAR365G1148 Trochodendron aralioides HOM05D007553 ORTHO05D009123 2.3e-07 59.3 86 57.0
Migut.N03014 Erythranthe guttata HOM05D007553 ORTHO05D009123 5.0e-07 58.2 91 49.5
Thhalv10006308m.g Eutrema salsugineum HOM05D007553 ORTHO05D009123 1.5e-06 56.6 75 52.0
MSTRG.24545 Avicennia marina HOM05D007553 ORTHO05D009123 1.9e-06 56.2 91 54.9
MD02G1000700 Malus domestica HOM05D007553 ORTHO05D009123 9.5e-06 53.9 99 48.5


User provided reference genes

Program Settings