Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 0.0e+00 1196.4 610 100.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 0.0e+00 1085.1 612 92.8
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 0.0e+00 1078.5 620 91.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.3e-312 1072.8 607 92.4
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.3e-312 1072.8 607 92.4
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.8e-311 1070.8 620 90.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.1e-302 1042.7 625 86.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.1e-302 1040.8 623 87.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-281 972.6 606 83.2
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.3e-271 939.5 605 82.3
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.6e-269 931.0 610 78.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 5.3e-257 891.0 608 75.7
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.0e-256 889.0 618 75.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.6e-256 888.6 533 85.7
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-253 879.8 619 75.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.5e-253 878.2 619 74.3
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.0e-253 877.5 614 75.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.9e-251 872.5 622 74.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.1e-249 864.8 621 73.6
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-248 863.2 621 73.4
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.9e-248 860.9 621 73.9
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.7e-247 859.4 625 72.2
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-247 859.4 618 73.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.8e-247 858.2 608 74.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 6.1e-245 850.9 616 71.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.8e-244 849.4 611 71.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 5.1e-244 847.8 605 73.6
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 6.7e-244 847.4 621 72.6
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.5e-243 845.5 616 72.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 3.7e-242 841.6 597 72.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 4.8e-242 841.3 609 71.8
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.8e-241 839.3 616 71.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 5.3e-241 837.8 600 72.2
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.3e-241 837.8 615 71.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 6.9e-241 837.4 616 70.6
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.5e-240 836.3 624 71.0
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 3.4e-240 835.1 621 71.7
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 3.4e-240 835.1 621 71.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.4e-240 835.1 610 72.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.0e-239 833.6 611 70.7
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 6.5e-239 830.9 624 70.5
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.6e-237 825.1 610 71.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.7e-237 824.7 600 71.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 7.9e-237 823.9 609 71.8
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 7.9e-237 823.9 629 69.5
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.0e-236 823.5 611 70.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.0e-236 823.5 611 70.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.4e-236 823.2 624 70.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.4e-236 823.2 620 69.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.8e-236 822.8 613 71.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.3e-236 822.4 624 69.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.3e-236 822.4 610 70.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 3.0e-236 822.0 611 70.4
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.0e-236 822.0 616 70.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.9e-236 821.6 608 71.9
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.1e-236 821.2 614 69.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.1e-236 821.2 601 71.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 8.8e-236 820.5 611 70.5
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.1e-235 820.1 624 70.2
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.5e-235 819.7 624 69.6
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.3e-235 818.5 611 70.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.4e-235 818.1 614 70.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.4e-235 817.4 615 70.4
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 9.7e-235 817.0 617 69.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.8e-234 815.5 596 71.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.8e-234 815.5 631 68.6
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.7e-234 815.1 595 71.6
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 8.2e-234 813.9 624 70.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.4e-233 813.1 613 70.1
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.8e-233 812.8 615 69.6
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.1e-233 811.6 610 69.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 4.1e-233 811.6 608 70.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 7.0e-233 810.8 601 70.7
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.6e-232 808.9 582 71.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.6e-232 808.9 615 69.3
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.6e-232 808.9 609 70.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.5e-232 808.5 608 70.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.9e-232 807.7 610 69.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-231 806.6 610 70.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.7e-231 806.2 631 68.8
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.9e-231 805.4 608 69.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.8e-231 805.1 596 70.8
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.0e-231 804.7 615 68.9
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.5e-231 803.9 607 69.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-230 803.5 599 69.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.1e-230 803.5 604 69.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.4e-230 803.1 593 71.3
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 2.5e-230 802.4 604 69.5
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 9.4e-230 800.4 581 69.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.6e-229 799.7 609 70.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-229 799.7 609 69.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.1e-229 799.3 615 68.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.7e-229 798.9 622 68.3
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.7e-229 798.9 582 72.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.7e-229 798.1 582 72.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-228 797.0 583 71.2
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.1e-227 793.5 609 69.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.5e-227 793.1 598 69.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.3e-227 792.0 584 71.1
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.7e-226 789.6 530 76.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.4e-225 786.6 614 67.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.7e-223 779.6 614 67.3
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.1e-221 772.7 599 68.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.7e-221 772.3 673 62.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.8e-220 769.6 528 73.3
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 6.3e-218 761.1 603 66.7
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 9.1e-217 757.3 559 71.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.6e-216 756.5 544 70.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.9e-216 754.6 570 68.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.3e-215 753.4 528 72.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.9e-214 749.6 601 65.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.5e-214 749.2 625 64.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.5e-214 748.0 575 66.6
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.7e-210 736.5 610 64.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.1e-209 730.7 616 64.6
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-208 730.3 596 66.3
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 7.7e-208 727.6 526 71.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 7.7e-208 727.6 526 71.3
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.1e-206 723.8 586 66.9
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.2e-206 721.1 617 63.5
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.0e-204 717.2 608 64.5
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.0e-204 715.7 594 61.8
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.4e-203 711.8 526 69.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.5e-203 711.1 519 69.6
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.5e-203 711.1 526 67.5
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.3e-199 699.5 520 68.3
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 2.3e-199 699.5 553 68.0
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.1e-196 689.1 513 69.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.2e-195 687.2 594 62.0
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 9.8e-195 684.1 388 89.7
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-190 670.6 579 61.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.2e-188 661.8 584 61.8
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.5e-187 660.2 525 66.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-187 659.4 600 60.2
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 9.8e-187 657.5 425 78.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-186 656.0 535 63.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-184 650.6 421 77.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 6.0e-184 648.3 419 78.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.6e-183 644.8 517 65.0
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 8.6e-183 644.4 592 60.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.8e-180 634.8 565 59.5
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.9e-180 634.4 620 57.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.4e-179 632.1 597 56.8
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.4e-179 632.1 496 66.3
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.4e-178 628.2 414 76.6
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.6e-160 568.9 467 66.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.7e-154 550.4 585 50.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.9e-150 537.0 485 57.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 9.7e-134 481.5 531 53.1
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.5e-126 456.8 463 55.9
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.3e-126 456.1 336 69.6
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 7.4e-126 455.3 332 72.9
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-120 438.0 339 67.6
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.5e-73 280.8 172 83.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 5.6e-73 279.6 172 84.3
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.0e-71 273.5 157 85.4
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 6.8e-71 272.7 169 84.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.4e-70 270.0 169 83.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.5e-65 255.0 145 89.0
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.4e-38 164.1 123 68.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.7e-35 154.5 98 79.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.2e-22 112.5 94 58.5
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.0e-21 107.1 99 53.5
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.5e-21 106.3 312 27.6
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.2e-19 102.4 60 85.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-19 102.4 140 45.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-18 99.0 273 29.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.2e-16 91.7 165 35.2
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.3e-15 87.0 251 29.1
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.0e-15 86.3 185 34.1
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.4e-12 79.0 70 68.6
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.6e-11 74.3 86 48.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.3e-10 71.6 97 46.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-07 62.8 97 41.2
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.5e-06 58.9 55 50.9


User provided reference genes

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