Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-111 406.0 189 100.0
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 7.2e-80 300.8 199 74.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-78 297.0 197 74.1
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-78 297.0 197 74.1
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-76 289.7 197 72.6
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.7e-76 289.7 197 72.6
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 8.3e-76 287.3 197 70.6
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.7e-71 271.6 194 66.5
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.0e-69 266.2 200 63.5
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.4e-69 265.0 197 64.5
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 9.8e-69 263.8 200 63.0
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-68 263.1 200 63.5
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-68 263.1 200 63.5
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.2e-68 262.7 200 63.0
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 2.9e-68 262.3 200 63.5
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.9e-68 262.3 200 62.5
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 8.3e-68 260.8 200 62.5
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.9e-67 259.6 197 62.4
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-67 259.6 200 62.5
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.9e-67 259.6 200 62.5
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-67 259.2 196 62.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-67 258.5 200 62.5
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 5.4e-67 258.1 200 62.0
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.4e-67 258.1 200 62.5
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-66 256.5 182 69.8
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.6e-66 256.5 197 62.4
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.0e-66 254.6 200 59.5
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.0e-66 254.6 196 62.2
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-65 251.9 254 50.4
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 5.0e-65 251.5 200 60.0
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.6e-65 251.1 197 62.4
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-64 250.0 199 60.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.9e-64 249.6 200 58.0
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.3e-64 248.4 199 59.8
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.3e-64 248.4 197 59.9
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.3e-64 248.4 197 61.9
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.3e-64 247.7 197 58.4
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 2.8e-63 245.7 196 55.1
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 8.0e-63 244.2 197 59.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 8.0e-63 244.2 197 59.9
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.1e-62 243.8 197 58.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.4e-62 243.4 197 56.3
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 3.1e-62 242.3 197 57.4
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 3.1e-62 242.3 197 56.3
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 5.2e-62 241.5 197 57.4
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 6.8e-62 241.1 198 57.1
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 8.9e-62 240.7 197 59.9
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 8.9e-62 240.7 197 59.9
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 8.9e-62 240.7 196 56.6
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 8.9e-62 240.7 199 58.3
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.5e-61 240.0 197 56.3
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 2.6e-61 239.2 198 56.1
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-61 238.8 197 59.9
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 3.4e-61 238.8 197 56.3
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 4.4e-61 238.4 197 53.8
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 9.8e-61 237.3 197 55.3
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 1.3e-60 236.9 190 60.0
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.3e-60 236.9 190 60.0
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 3.7e-60 235.3 187 59.9
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.7e-60 235.3 196 55.6
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 4.9e-60 235.0 196 55.6
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 6.4e-60 234.6 197 55.3
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 8.3e-60 234.2 197 53.3
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.4e-59 233.4 187 59.9
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.4e-59 233.4 187 58.8
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 2.4e-59 232.6 193 58.0
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 4.1e-59 231.9 197 54.3
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 7.0e-59 231.1 197 52.8
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 9.2e-59 230.7 191 59.7
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 9.2e-59 230.7 198 56.6
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 9.2e-59 230.7 196 55.6
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.2e-59 230.7 186 58.1
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.2e-58 230.3 197 52.8
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 1.2e-58 230.3 197 54.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.6e-58 229.9 195 54.9
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.1e-58 229.6 197 54.3
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.5e-58 228.8 192 56.8
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.6e-58 228.4 207 54.1
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 6.0e-58 228.0 196 54.1
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.0e-57 227.3 197 51.8
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.0e-57 227.3 197 53.3
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-57 226.9 146 69.9
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.3e-57 226.9 197 54.3
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.7e-57 226.5 196 52.6
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.7e-57 226.5 196 53.6
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.7e-57 226.5 188 56.9
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 3.0e-57 225.7 197 50.3
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 3.0e-57 225.7 195 52.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 3.9e-57 225.3 195 52.8
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-56 223.8 197 52.8
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-56 223.8 197 53.3
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.1e-56 223.8 195 53.8
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 1.5e-56 223.4 197 52.3
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.9e-56 223.0 186 56.5
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.9e-56 223.0 198 53.0
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 4.3e-56 221.9 197 50.8
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 5.6e-56 221.5 205 52.7
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 9.5e-56 220.7 198 52.0
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 9.5e-56 220.7 200 52.5
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.6e-55 218.8 196 52.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-55 218.8 196 52.0
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 4.7e-55 218.4 185 59.5
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.2e-55 218.0 196 51.5
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 6.2e-55 218.0 198 51.5
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-54 216.5 198 51.5
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 5.2e-54 214.9 191 52.9
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 6.8e-54 214.5 187 53.5
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.5e-53 213.4 176 56.8
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 1.5e-53 213.4 184 53.8
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 2.0e-53 213.0 186 53.8
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 8.3e-52 207.6 186 51.1
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.4e-51 206.8 196 52.6
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.9e-51 206.5 189 52.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 7.1e-51 204.5 198 50.0
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.5e-50 202.2 145 60.7
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.5e-50 202.2 144 59.0
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.8e-50 201.1 215 47.4
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 7.8e-50 201.1 196 50.5
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.0e-49 200.7 147 59.9
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 1.3e-49 200.3 190 50.5
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 2.3e-49 199.5 185 49.7
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 6.6e-49 198.0 140 59.3
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.5e-48 196.8 157 56.1
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.9e-48 196.4 157 55.4
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.5e-48 196.1 185 53.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-46 189.9 146 56.2
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.4e-46 189.5 232 45.3
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 3.4e-45 185.7 197 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.4e-45 185.3 196 46.4
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.4e-43 180.3 208 45.2
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 5.4e-43 178.3 127 62.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 4.3e-40 168.7 200 44.5
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.4e-38 163.7 184 44.0
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 5.3e-38 161.8 117 59.8
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.2e-37 160.6 183 44.3
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 5.8e-37 158.3 156 51.9
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 9.3e-35 151.0 116 56.9
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 9.3e-35 151.0 144 47.2
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.7e-34 149.4 159 48.4
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.8e-29 131.7 123 54.5
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.0e-25 119.4 96 53.1
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 4.3e-24 115.5 153 39.2
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 5.3e-22 108.6 73 61.6
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 5.3e-22 108.6 199 34.7
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 9.0e-22 107.8 72 66.7
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 9.9e-21 104.4 71 59.2
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 4.9e-20 102.1 136 42.6
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 8.4e-20 101.3 136 42.6
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 8.4e-20 101.3 136 42.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 7.1e-19 98.2 74 52.7
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.3e-19 97.8 71 54.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.6e-18 97.1 70 60.0
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.9e-17 92.4 60 58.3
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 6.7e-17 91.7 144 41.0
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.6e-15 87.0 208 32.2
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.6e-13 79.7 57 56.1
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 9.3e-11 71.2 44 61.4
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.1e-09 65.5 84 45.2
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.4e-06 56.6 130 32.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 5.3e-06 55.5 39 56.4


User provided reference genes

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