Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 3.8e-133 478.4 280 100.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 2.7e-115 419.1 289 79.6
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 7.9e-115 417.5 287 79.1
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 2.3e-114 416.0 287 79.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 5.1e-114 414.8 292 78.4
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.9e-113 412.9 290 79.7
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 9.0e-111 404.1 295 76.9
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.3e-109 400.2 300 78.0
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.2e-108 395.6 292 76.4
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.6e-107 393.3 299 77.6
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 3.5e-107 392.1 231 89.2
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 6.0e-107 391.3 289 76.8
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-106 390.2 292 75.3
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.3e-106 390.2 292 75.3
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.3e-106 390.2 289 76.5
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.3e-105 385.2 295 74.2
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 4.8e-104 381.7 290 73.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.4e-103 379.4 283 76.3
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.5e-100 369.4 223 86.5
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.5e-100 368.2 231 82.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.2e-99 367.1 291 75.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 8.7e-98 360.9 290 69.7
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.7e-96 355.5 223 82.1
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 8.5e-93 344.4 196 88.3
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.1e-92 344.0 216 83.3
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.1e-92 344.0 216 83.3
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.4e-92 343.6 196 88.8
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.9e-92 343.2 207 85.0
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.9e-92 343.2 206 84.0
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 4.2e-92 342.0 216 82.9
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.5e-92 341.7 216 83.3
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 9.4e-92 340.9 196 89.3
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.2e-91 340.5 196 88.3
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.7e-91 339.3 284 66.5
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.7e-91 339.3 195 88.2
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 2.7e-91 339.3 187 89.8
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 3.6e-91 339.0 289 65.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 3.6e-91 339.0 207 83.6
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 3.6e-91 339.0 286 67.1
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.6e-91 338.6 284 66.2
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 4.6e-91 338.6 284 66.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 4.6e-91 338.6 187 89.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.6e-91 338.6 216 80.1
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 6.1e-91 338.2 187 90.4
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 6.1e-91 338.2 187 90.4
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 7.9e-91 337.8 216 80.6
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-90 337.4 198 86.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.4e-90 337.0 210 82.4
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.4e-90 337.0 206 83.5
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.4e-90 337.0 204 85.3
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.8e-90 336.7 185 89.7
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.8e-90 336.7 216 81.5
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.8e-90 336.7 187 88.8
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.3e-90 336.3 216 82.9
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.3e-90 336.3 217 79.3
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.0e-90 335.9 187 89.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 3.0e-90 335.9 187 89.3
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.0e-90 335.9 217 79.7
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.0e-90 335.9 212 82.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 3.0e-90 335.9 210 81.9
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 3.9e-90 335.5 200 85.0
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 3.9e-90 335.5 286 66.4
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.1e-90 335.1 185 89.7
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 5.1e-90 335.1 187 89.3
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 5.1e-90 335.1 196 86.7
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 6.7e-90 334.7 212 82.5
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 6.7e-90 334.7 198 85.4
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 8.8e-90 334.3 185 89.7
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 8.8e-90 334.3 192 87.5
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.1e-89 334.0 185 89.2
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.1e-89 334.0 209 81.8
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.1e-89 334.0 187 89.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.5e-89 333.6 215 80.0
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.5e-89 333.6 215 80.0
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.0e-89 333.2 206 82.0
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 2.5e-89 332.8 212 81.1
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.5e-89 332.8 214 79.9
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.5e-89 332.8 214 79.9
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 3.3e-89 332.4 185 89.7
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 4.3e-89 332.0 216 79.2
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 7.4e-89 331.3 212 80.2
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.7e-88 330.1 187 88.2
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.7e-88 330.1 185 87.0
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.7e-88 330.1 211 81.0
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.2e-88 329.7 218 77.1
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.8e-88 329.3 185 87.6
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-87 327.0 179 89.9
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 3.1e-87 325.9 185 85.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 3.1e-87 325.9 210 80.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.1e-87 325.9 185 84.9
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 3.1e-87 325.9 196 84.7
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 3.1e-87 325.9 196 84.7
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.1e-87 325.9 200 82.0
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 4.1e-87 325.5 185 87.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.3e-87 325.1 187 86.1
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 6.9e-87 324.7 202 84.2
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.5e-86 323.6 196 82.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 5.9e-86 321.6 211 80.1
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 7.7e-86 321.2 185 85.9
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.7e-85 320.1 195 83.1
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.9e-85 319.3 212 79.7
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.5e-85 318.2 185 85.9
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.1e-84 317.4 185 85.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.7e-83 312.8 193 83.9
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 4.7e-83 312.0 187 84.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 6.1e-83 311.6 275 63.6
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.4e-82 310.5 184 82.6
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 6.7e-82 308.1 187 82.9
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.8e-82 307.8 184 83.2
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 7.0e-79 298.1 171 86.5
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 3.2e-76 289.3 155 93.5
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 2.3e-74 283.1 157 89.8
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 3.0e-74 282.7 188 78.7
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 7.4e-73 278.1 235 64.7
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 6.5e-69 265.0 153 84.3
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.5e-65 251.5 160 76.2
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 7.5e-65 251.5 167 77.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.7e-64 250.4 134 93.3
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 4.8e-64 248.8 140 87.9
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 4.8e-64 248.8 157 79.6
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.1e-63 247.7 153 82.4
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.2e-62 244.2 140 84.3
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 6.5e-61 238.4 193 62.7
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 3.2e-60 236.1 160 70.6
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.2e-59 234.2 191 70.2
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 8.8e-58 228.0 187 65.8
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 8.6e-53 211.5 121 86.8
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 6.3e-48 195.3 192 60.9
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.7e-46 189.9 120 77.5
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-39 167.2 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.7e-38 163.3 89 89.9
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.9e-32 143.3 160 49.4
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 3.5e-30 136.3 146 53.4
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.7e-24 117.5 101 63.4
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.7e-24 117.5 78 71.8
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.1e-23 112.8 78 69.2
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.6e-22 109.4 101 61.4
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 6.8e-18 95.5 140 44.3
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 3.8e-16 89.7 81 61.7
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 6.0e-06 55.8 65 43.1


User provided reference genes

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