Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-90 336.3 199 100.0
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.6e-61 238.8 170 79.4
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.4e-60 236.9 146 85.6
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 7.4e-59 231.1 146 84.9
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 9.7e-59 230.7 197 76.6
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 9.7e-59 230.7 197 76.6
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 9.4e-54 214.2 198 69.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 5.2e-52 208.4 197 67.5
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 8.8e-52 207.6 178 70.8
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 3.7e-50 202.2 181 63.0
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 4.8e-50 201.8 197 59.9
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 9.1e-49 197.6 194 68.0
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 4.5e-48 195.3 166 66.3
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 7.7e-48 194.5 168 63.1
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.2e-45 187.2 169 61.5
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 2.3e-44 183.0 157 61.8
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.3e-44 183.0 184 59.2
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 7.5e-43 177.9 196 59.2
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.3e-42 177.2 149 66.4
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 8.5e-39 164.5 146 61.0
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.8e-36 156.8 151 57.0
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 2.3e-36 156.4 149 57.7
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.0e-35 153.3 147 59.2
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.7e-34 149.1 166 51.8
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.4e-33 147.1 130 57.7
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 2.4e-33 146.4 155 52.9
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.1e-33 144.4 160 51.2
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 2.0e-32 143.3 140 55.0
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.7e-32 142.9 147 53.1
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 3.5e-32 142.5 149 53.7
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 3.5e-32 142.5 122 60.7
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 5.9e-32 141.7 168 51.2
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 7.7e-32 141.4 137 54.7
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 7.7e-32 141.4 151 53.6
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 7.7e-32 141.4 137 54.7
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 7.7e-32 141.4 137 54.7
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.0e-31 141.0 122 59.8
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.3e-31 140.6 154 51.3
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.7e-31 140.2 136 54.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.2e-31 139.8 128 55.5
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.2e-31 139.8 128 55.5
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.9e-31 139.4 122 59.0
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 3.8e-31 139.0 131 55.0
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 5.0e-31 138.7 135 55.6
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 6.5e-31 138.3 157 49.7
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 6.5e-31 138.3 163 47.9
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 8.5e-31 137.9 146 51.4
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.5e-30 137.1 139 56.1
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.5e-30 137.1 150 50.7
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.5e-30 137.1 150 50.7
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.9e-30 136.7 154 50.0
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 151 47.7
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.9e-30 136.7 135 51.9
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 2.5e-30 136.3 149 51.7
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.5e-30 136.3 133 57.1
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.2e-30 136.0 140 50.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 3.2e-30 136.0 137 51.8
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 4.2e-30 135.6 150 49.3
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 4.2e-30 135.6 147 48.3
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 7.2e-30 134.8 133 54.1
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 9.5e-30 134.4 131 53.4
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.2e-29 134.0 158 46.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.2e-29 134.0 150 48.7
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 2.1e-29 133.3 150 47.3
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 2.1e-29 133.3 147 50.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 2.8e-29 132.9 132 52.3
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.6e-29 132.5 129 52.7
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 4.7e-29 132.1 147 47.6
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 4.7e-29 132.1 138 51.4
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 6.1e-29 131.7 141 49.6
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 8.0e-29 131.3 138 50.0
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.0e-28 131.0 147 48.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.4e-28 130.6 121 57.0
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.4e-28 130.6 141 48.9
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.8e-28 130.2 142 50.7
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.8e-28 130.2 163 45.4
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 2.3e-28 129.8 143 49.7
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.3e-28 129.8 134 53.7
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.0e-28 129.4 130 52.3
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 6.8e-28 128.3 139 50.4
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.2e-27 127.5 122 55.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.2e-27 127.5 122 55.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.5e-27 127.1 133 51.1
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.5e-27 127.1 142 50.0
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 3.4e-27 125.9 152 48.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.4e-27 125.9 123 56.1
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.4e-27 125.6 123 58.5
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 5.7e-27 125.2 107 60.7
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 5.7e-27 125.2 150 50.0
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.3e-26 124.0 100 66.0
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 1.7e-26 123.6 221 43.0
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.7e-26 123.6 116 61.2
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.2e-26 123.2 141 48.2
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.2e-26 123.2 114 57.9
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 2.2e-26 123.2 139 47.5
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.7e-26 122.5 138 50.0
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.8e-25 120.2 140 50.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.8e-25 120.2 146 47.3
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.8e-25 120.2 146 47.3
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.1e-25 119.0 146 47.3
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 56.2
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-25 118.6 112 53.6
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 9.2e-25 117.9 112 53.6
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.0e-24 116.7 143 46.9
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 5.9e-24 115.2 165 41.2
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.0e-23 114.4 115 54.8
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 2.3e-23 113.2 117 51.3
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 2.3e-23 113.2 165 40.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.3e-23 113.2 117 52.1
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.6e-23 111.3 142 48.6
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 8.6e-23 111.3 141 47.5
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 2.5e-22 109.8 135 45.9
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 4.3e-22 109.0 142 42.3
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.6e-22 108.6 163 44.2
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.6e-22 108.6 142 47.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.7e-21 105.5 141 45.4
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 6.1e-21 105.1 136 44.1
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 5.2e-20 102.1 135 44.4
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 8.9e-20 101.3 139 42.4
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.5e-19 98.2 114 50.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 3.2e-17 92.8 125 40.0
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 7.8e-16 88.2 96 55.2
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.3e-15 86.7 110 40.9
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 2.3e-15 86.7 164 37.2
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.2e-13 80.9 97 49.5
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.7e-13 79.0 113 41.6
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 4.0e-12 75.9 57 64.9
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.5e-11 73.9 152 30.9
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.9e-09 67.0 138 31.9
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 7.0e-09 65.1 116 42.2
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 3.5e-08 62.8 130 32.3
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.3e-07 60.8 115 30.4
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.0e-07 59.7 76 47.4
AL6G40510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.6e-07 58.2 55 50.9
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-06 56.6 118 35.6
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 9.5e-06 54.7 68 45.6


User provided reference genes

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