Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08843 Brassica carinata HOM05D001286 ORTHO05D000440 3.7e-33 144.1 61 100.0
BcaB02g08844 Brassica carinata HOM05D001286 ORTHO05D000440 2.4e-24 114.8 51 94.1
BcaB02g08841 Brassica carinata HOM05D001286 ORTHO05D000440 1.1e-21 105.9 51 84.3
Carub.0004s2747 Capsella rubella HOM05D001286 ORTHO05D000440 2.4e-16 88.2 53 69.8
C07p03210 Brassica napus HOM05D001286 ORTHO05D000440 3.1e-16 87.8 52 73.1
BolC7t40718H Brassica oleracea HOM05D001286 ORTHO05D000440 3.1e-16 87.8 52 73.1
A07p01550 Brassica napus HOM05D001286 ORTHO05D000440 1.2e-15 85.9 52 71.2
C04p05620 Brassica napus HOM05D001286 ORTHO05D000440 1.5e-15 85.5 52 67.3
BolC4t22191H Brassica oleracea HOM05D001286 ORTHO05D000440 1.5e-15 85.5 52 67.3
AL4G43800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 2.6e-15 84.7 54 66.7
AT2G44735 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.3e-14 82.4 51 66.7
Sp3g32590 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.9e-14 81.3 50 68.0
CARHR139790 Cardamine hirsuta HOM05D001286 ORTHO05D000440 5.0e-14 80.5 52 65.4
BcaB03g14398 Brassica carinata HOM05D001286 ORTHO05D000440 2.1e-12 75.1 50 64.0
A07p16390 Brassica napus HOM05D001286 ORTHO05D000440 2.1e-12 75.1 50 64.0
C07p24090 Brassica napus HOM05D001286 ORTHO05D000440 2.1e-12 75.1 50 64.0
BolC7t42933H Brassica oleracea HOM05D001286 ORTHO05D000440 2.1e-12 75.1 50 64.0
BraA07t29366Z Brassica rapa HOM05D001286 ORTHO05D000440 2.1e-12 75.1 50 64.0
BcaB05g22018 Brassica carinata HOM05D001286 ORTHO05D000440 6.1e-12 73.6 53 60.4
BcaC03g14450 Brassica carinata HOM05D001286 ORTHO05D000440 6.1e-12 73.6 53 60.4
BolC2t08007H Brassica oleracea HOM05D001286 ORTHO05D000440 6.1e-12 73.6 53 60.4
A02p11260 Brassica napus HOM05D001286 ORTHO05D000440 2.3e-11 71.6 53 60.4
BraA02t06188Z Brassica rapa HOM05D001286 ORTHO05D000440 2.3e-11 71.6 53 60.4
BcaB03g16712 Brassica carinata HOM05D001286 ORTHO05D000440 3.9e-11 70.9 52 65.4
AT3G18720 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 6.7e-11 70.1 67 50.7
BolC2t09692H Brassica oleracea HOM05D001286 ORTHO05D000440 1.1e-10 69.3 52 59.6
BcaB01g03228 Brassica carinata HOM05D001286 ORTHO05D000440 1.5e-10 68.9 55 52.7
Carub.0003s1850 Capsella rubella HOM05D001286 ORTHO05D000440 2.6e-10 68.2 53 56.6
Sp3g32580 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.3e-10 67.8 55 52.7
AL3G32070 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 3.7e-09 64.3 51 54.9
BcaC02g12286 Brassica carinata HOM05D001286 ORTHO05D000440 3.7e-09 64.3 35 71.4
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 1.1e-08 62.8 53 54.7
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 2.4e-08 61.6 54 51.9
C07p05950 Brassica napus HOM05D001286 ORTHO05D024426 3.1e-08 61.2 51 54.9
BolC7t41003H Brassica oleracea HOM05D001286 ORTHO05D024426 3.1e-08 61.2 51 54.9
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 5.3e-08 60.5 54 51.9
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 6.9e-08 60.1 53 54.7
MD12G1025100 Malus domestica HOM05D001286 ORTHO05D000440 6.9e-08 60.1 54 51.9
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 1.2e-07 59.3 53 54.7
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 1.5e-07 58.9 54 50.0
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 2.0e-07 58.5 60 46.7
Peaxi162Scf00404g00218 Petunia axillaris HOM05D001286 ORTHO05D000440 2.0e-07 58.5 54 50.0
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 2.6e-07 58.2 54 50.0
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 2.6e-07 58.2 53 50.9
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 2.6e-07 58.2 53 50.9
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 2.6e-07 58.2 53 50.9
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 3.4e-07 57.8 57 45.6
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 3.4e-07 57.8 54 50.0
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 3.4e-07 57.8 54 50.0
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 3.4e-07 57.8 54 50.0
BcaB07g31732 Brassica carinata HOM05D001286 ORTHO05D000440 5.9e-07 57.0 51 45.1
C02p18620 Brassica napus HOM05D001286 ORTHO05D000440 5.9e-07 57.0 45 57.8
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 5.9e-07 57.0 51 51.0
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.0e-06 56.2 53 50.9
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 1.0e-06 56.2 51 51.0
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.0e-06 56.2 53 49.1
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 1.3e-06 55.8 53 49.1
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 1.3e-06 55.8 54 50.0
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 1.3e-06 55.8 53 50.9
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 1.3e-06 55.8 53 50.9
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 1.3e-06 55.8 54 50.0
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 1.3e-06 55.8 54 48.1
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.7e-06 55.5 53 50.9
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 1.7e-06 55.5 54 46.3
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 1.7e-06 55.5 71 40.8
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 1.7e-06 55.5 54 46.3
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 1.7e-06 55.5 71 43.7
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 2.2e-06 55.1 53 49.1
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 2.2e-06 55.1 53 50.9
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 2.2e-06 55.1 53 49.1
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 2.2e-06 55.1 51 51.0
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 2.9e-06 54.7 54 48.1
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 2.9e-06 54.7 54 48.1
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 2.9e-06 54.7 54 48.1
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 2.9e-06 54.7 54 48.1
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 3.8e-06 54.3 71 43.7
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 3.8e-06 54.3 53 50.9
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 3.8e-06 54.3 54 48.1
TWI77G1030 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 3.8e-06 54.3 52 48.1
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 3.8e-06 54.3 53 50.9
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 5.0e-06 53.9 54 46.3
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 5.0e-06 53.9 53 49.1
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 6.5e-06 53.5 54 44.4
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 6.5e-06 53.5 54 44.4
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 6.5e-06 53.5 53 49.1
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 6.5e-06 53.5 51 49.0
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 6.5e-06 53.5 51 49.0
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 6.5e-06 53.5 51 49.0
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 6.5e-06 53.5 53 47.2
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 6.5e-06 53.5 53 49.1
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 6.5e-06 53.5 53 49.1
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 8.5e-06 53.1 51 47.1


User provided reference genes

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