Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08842 Brassica carinata HOM05D005587 ORTHO05D007287 1.8e-90 335.9 168 100.0
BcaC02g12285 Brassica carinata HOM05D005587 ORTHO05D007287 3.3e-84 315.1 158 100.0
BolC4t22192H Brassica oleracea HOM05D005587 ORTHO05D007287 3.3e-84 315.1 158 100.0
C04p05630 Brassica napus HOM05D005587 ORTHO05D007287 3.9e-77 291.6 158 94.9
A05p04800 Brassica napus HOM05D005587 ORTHO05D007287 1.9e-76 289.3 158 94.3
BcaB02g08845 Brassica carinata HOM05D005587 ORTHO05D007287 1.7e-72 276.2 159 89.9
BraA05t19456Z Brassica rapa HOM05D005587 ORTHO05D007287 2.9e-72 275.4 158 89.2
Sp4g26740 Schrenkiella parvula HOM05D005587 ORTHO05D007287 4.2e-71 271.6 158 87.3
Thhalv10001410m.g Eutrema salsugineum HOM05D005587 ORTHO05D007287 2.1e-70 269.2 158 88.0
CARHR139870 Cardamine hirsuta HOM05D005587 ORTHO05D007287 7.9e-70 267.3 158 87.3
AT2G44660 Arabidopsis thaliana HOM05D005587 ORTHO05D007287 2.3e-69 265.8 158 86.1
Aa31LG1G26200 Aethionema arabicum HOM05D005587 ORTHO05D007287 1.1e-66 256.9 156 81.4
Carub.0004s2721 Capsella rubella HOM05D005587 ORTHO05D007287 6.9e-66 254.2 158 82.9
AL4G43710 Arabidopsis lyrata HOM05D005587 ORTHO05D007287 1.5e-65 253.1 158 79.7
THA.LOC104817180 Tarenaya hassleriana HOM05D005587 ORTHO05D007287 3.0e-61 238.8 159 79.2
Gohir.A02G117800 Gossypium hirsutum HOM05D005587 ORTHO05D007287 2.2e-56 222.6 156 71.8
Gorai.003G062300 Gossypium raimondii HOM05D005587 ORTHO05D007287 6.5e-56 221.1 156 71.2
Ciclev10014906m.g Citrus clementina HOM05D005587 ORTHO05D007287 8.5e-56 220.7 170 67.1
Gohir.D03G058500 Gossypium hirsutum HOM05D005587 ORTHO05D007287 2.5e-55 219.2 156 70.5
PGR004G1682 Punica granatum HOM05D005587 ORTHO05D007287 3.2e-55 218.8 168 66.1
Sed0021182 Sechium edule HOM05D005587 ORTHO05D007287 2.3e-53 212.6 165 66.1
Cpa.g.sc50.144 Carica papaya HOM05D005587 ORTHO05D007287 6.7e-53 211.1 168 63.7
Lj5g0020653 Lotus japonicus HOM05D005587 ORTHO05D007287 6.7e-53 211.1 170 64.7
Medtr5g077540 Medicago truncatula HOM05D005587 ORTHO05D007287 8.8e-53 210.7 170 64.1
Lj4g0023083 Lotus japonicus HOM05D005587 ORTHO05D007287 1.1e-52 210.3 170 65.3
MELO3C022453.2 Cucumis melo HOM05D005587 ORTHO05D007287 2.0e-52 209.5 165 64.8
Lalb_Chr07g0187561 Lupinus albus HOM05D005587 ORTHO05D007287 2.0e-52 209.5 171 63.7
arahy.Tifrunner.gnm1.ann1.5U4ES3 Arachis hypogaea HOM05D005587 ORTHO05D007287 3.3e-52 208.8 163 67.5
TAR375G0462 Trochodendron aralioides HOM05D005587 ORTHO05D007287 4.3e-52 208.4 169 63.3
Thecc.09G197000 Theobroma cacao HOM05D005587 ORTHO05D007287 7.4e-52 207.6 169 63.3
CSS0020453 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 9.7e-52 207.2 169 60.4
ClCG06G000880 Citrullus lanatus HOM05D005587 ORTHO05D007287 9.7e-52 207.2 167 64.1
Prupe.2G118200 Prunus persica HOM05D005587 ORTHO05D007287 9.7e-52 207.2 156 67.9
QL04p026316 Quercus lobata HOM05D005587 ORTHO05D007287 1.7e-51 206.5 169 63.9
CANSAT78G1032 Cannabis sativa HOM05D005587 ORTHO05D007287 2.8e-51 205.7 165 64.2
Glyma.08G098700 Glycine max HOM05D005587 ORTHO05D007287 2.8e-51 205.7 170 63.5
TPR.G9570 Trifolium pratense HOM05D005587 ORTHO05D007287 3.7e-51 205.3 170 62.9
vmacro21076 Vaccinium macrocarpon HOM05D005587 ORTHO05D007287 3.7e-51 205.3 169 60.9
CANSAT25G2964 Cannabis sativa HOM05D005587 ORTHO05D007287 4.8e-51 204.9 165 61.8
COL.COLO4_23407 Corchorus olitorius HOM05D005587 ORTHO05D007287 8.2e-51 204.1 178 59.6
MD02G1223000 Malus domestica HOM05D005587 ORTHO05D007287 8.2e-51 204.1 169 62.1
Duzib168G0929 Durio zibethinus HOM05D005587 ORTHO05D007287 1.1e-50 203.8 169 63.3
Rhsim01G0143000 Rhododendron simsii HOM05D005587 ORTHO05D007287 1.4e-50 203.4 168 60.7
GSVIVG01018341001 Vitis vinifera HOM05D005587 ORTHO05D007287 1.4e-50 203.4 156 67.3
CSS0020891 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 1.8e-50 203.0 169 59.8
Ca_19146_v3 Cicer arietinum L. HOM05D005587 ORTHO05D007287 3.1e-50 202.2 170 62.9
Sabra14G0040000 Salix brachista HOM05D005587 ORTHO05D007287 3.1e-50 202.2 170 61.2
Aqoxy5G01488 Aquilegia oxysepala HOM05D005587 ORTHO05D007287 4.1e-50 201.8 170 57.6
RcHm_v2.0_Chr1g0344321 Rosa chinensis HOM05D005587 ORTHO05D007287 6.9e-50 201.1 168 63.7
CiPaw.13G083300 Carya illinoinensis HOM05D005587 ORTHO05D007287 1.2e-49 200.3 161 63.4
Potri.014G053200 Populus trichocarpa HOM05D005587 ORTHO05D007287 3.4e-49 198.7 169 61.5
Lsat_1_v5_gn_3_39780 Lactuca sativa HOM05D005587 ORTHO05D007287 4.5e-49 198.4 156 60.9
FvH4_7g08900 Fragaria vesca HOM05D005587 ORTHO05D007287 5.9e-49 198.0 168 62.5
FAN06G5081 Fragaria x ananassa HOM05D005587 ORTHO05D007287 5.9e-49 198.0 168 62.5
DCAR_025030 Daucus carota HOM05D005587 ORTHO05D007287 1.0e-48 197.2 167 59.9
FAN03G1924 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-48 196.8 168 61.9
FAN10G2519 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-48 196.8 168 61.9
FAN10G3974 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-48 196.8 168 61.9
Manes.05G057700 Manihot esculenta HOM05D005587 ORTHO05D007287 1.3e-48 196.8 168 60.1
ECA236G1181 Erigeron canadensis HOM05D005587 ORTHO05D007287 1.7e-48 196.4 157 62.4
TWI59G0612 Tripterygium wilfordii HOM05D005587 ORTHO05D007287 1.7e-48 196.4 169 57.4
FAN01G1806 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.9e-48 195.7 168 61.9
PGSC0003DMG402001720 Solanum tuberosum HOM05D005587 ORTHO05D007287 3.8e-48 195.3 156 59.6
Dinv44029 Davidia involucrata HOM05D005587 ORTHO05D007287 5.0e-48 194.9 169 60.4
Solyc01g088650.4 Solanum lycopersicum HOM05D005587 ORTHO05D007287 6.5e-48 194.5 156 60.3
HPP92_001519 Vanilla planifolia HOM05D005587 ORTHO05D007287 6.5e-48 194.5 156 58.3
VMungo0720G2234 Vigna mungo HOM05D005587 ORTHO05D007287 6.5e-48 194.5 172 61.0
Nn1g00683 Nelumbo nucifera HOM05D005587 ORTHO05D007287 1.4e-47 193.4 164 62.8
Sopen01g035500 Solanum pennellii HOM05D005587 ORTHO05D007287 1.9e-47 193.0 156 59.6
Cc02_g25560 Coffea canephora HOM05D005587 ORTHO05D007287 3.2e-47 192.2 157 60.5
Sc02g0003240 Simmondsia chinensis HOM05D005587 ORTHO05D007287 3.2e-47 192.2 167 58.1
Nitab4.5_0005064g0010 Nicotiana tabacum HOM05D005587 ORTHO05D007287 5.5e-47 191.4 156 60.3
Eucgr.E01703 Eucalyptus grandis HOM05D005587 ORTHO05D007287 7.2e-47 191.0 168 59.5
Nitab4.5_0007434g0020 Nicotiana tabacum HOM05D005587 ORTHO05D007287 1.6e-46 189.9 156 59.6
Peaxi162Scf00793g00218 Petunia axillaris HOM05D005587 ORTHO05D007287 1.6e-46 189.9 156 60.9
SGA_v2.0_scaffold95G28723 Striga asiatica HOM05D005587 ORTHO05D007287 2.1e-46 189.5 155 59.4
Hund17123 Selenicereus undatus HOM05D005587 ORTHO05D007287 4.7e-46 188.3 165 56.4
AUR62023371 Chenopodium quinoa HOM05D005587 ORTHO05D007287 7.9e-46 187.6 167 57.5
Os02g0688500 Oryza sativa ssp. japonica HOM05D005587 ORTHO05D007287 1.0e-45 187.2 158 57.6
PSO063G5522 Papaver somniferum HOM05D005587 ORTHO05D007287 1.4e-45 186.8 174 55.7
SGA_v2.0_scaffold77G25257 Striga asiatica HOM05D005587 ORTHO05D007287 1.4e-45 186.8 155 58.7
CAN.G756.20 Capsicum annuum HOM05D005587 ORTHO05D007287 5.1e-45 184.9 156 57.7
HanXRQChr17g0542121 Helianthus annuus HOM05D005587 ORTHO05D007287 2.6e-44 182.6 156 60.3
Migut.N01719 Erythranthe guttata HOM05D005587 ORTHO05D007287 9.7e-44 180.6 160 57.5
PSO782G3200 Papaver somniferum HOM05D005587 ORTHO05D007287 2.2e-43 179.5 174 54.0
Lj9A550G69 Lonicera japonica HOM05D005587 ORTHO05D007287 2.8e-43 179.1 178 53.4
ATR1098G018 Amborella trichopoda HOM05D005587 ORTHO05D007287 1.8e-42 176.4 159 56.6
Zm00001eb251030 Zea mays HOM05D005587 ORTHO05D007287 7.0e-42 174.5 158 53.8
EL10Ac1g00718 Beta vulgaris HOM05D005587 ORTHO05D007287 9.1e-42 174.1 168 51.8
unitig_748.g7123 Utricularia gibba HOM05D005587 ORTHO05D007287 1.0e-40 170.6 155 55.5
Oeu018164.2 Olea europaea HOM05D005587 ORTHO05D007287 1.1e-39 167.2 202 46.5
CsaV3_6G006720 Cucumis sativus L. HOM05D005587 ORTHO05D007287 5.5e-39 164.9 137 64.2
Actinidia21616 Actinidia chinensis HOM05D005587 ORTHO05D007287 3.0e-37 159.1 138 60.1
AUR62013785 Chenopodium quinoa HOM05D005587 ORTHO05D007287 4.4e-36 155.2 145 56.6
Pp3c14_19880 Physcomitrium patens HOM05D005587 ORTHO05D007287 4.8e-35 151.8 164 48.8
Ah.05g177750 Amaranthus hybridus HOM05D005587 ORTHO05D007287 1.1e-34 150.6 166 49.4
Cfa011027 Carpinus fangiana HOM05D005587 ORTHO05D007287 1.0e-32 144.1 130 60.8
Haze_02898 Corylus avellana HOM05D005587 ORTHO05D007287 1.3e-32 143.7 116 66.4
AagrBONN_evm.TU.Sc2ySwM_344.1258 Anthoceros agrestis HOM05D005587 ORTHO05D007287 2.2e-32 142.9 168 44.0
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 6.1e-30 134.8 77 79.2
Mapoly0011s0009 Marchantia polymorpha HOM05D005587 ORTHO05D007287 6.1e-30 134.8 177 42.9
Hma1.2p1_0173F.1_g076470 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 1.4e-29 133.7 75 82.7
Actinidia12629 Actinidia chinensis HOM05D005587 ORTHO05D007287 3.0e-29 132.5 94 66.0
Glyma.05G142800 Glycine max HOM05D005587 ORTHO05D007287 3.4e-28 129.0 77 79.2
AagrBONN_evm.TU.Sc2ySwM_362.1445 Anthoceros agrestis HOM05D005587 ORTHO05D007287 7.5e-20 101.3 95 52.6
CDE03G0214 Ceratophyllum demersum HOM05D005587 ORTHO05D007287 5.0e-16 88.6 52 73.1
Cre09.g414250 Chlamydomonas reinhardtii HOM05D005587 ORTHO05D007287 5.0e-16 88.6 151 35.1
Haze_26243 Corylus avellana HOM05D005587 ORTHO05D007287 9.5e-15 84.3 163 31.3
MCO07G713 Micromonas commoda HOM05D005587 ORTHO05D007287 7.5e-12 74.7 174 33.3
SMO228G0062 Selaginella moellendorffii HOM05D005587 ORTHO05D007287 1.3e-11 73.9 51 60.8
Atru.chr4.1484 Acer truncatum HOM05D005587 ORTHO05D007287 6.4e-11 71.6 37 86.5
Hma1.2p1_0173F.1_g076460 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 8.3e-11 71.2 37 86.5
Phvul.007G221000 Phaseolus vulgaris HOM05D005587 ORTHO05D007287 3.2e-10 69.3 41 75.6
Cfa024728 Carpinus fangiana HOM05D005587 ORTHO05D007287 7.8e-09 64.7 157 28.0
PRCOL_00005170 Prasinoderma coloniale HOM05D005587 ORTHO05D007287 1.3e-08 63.9 150 30.7


User provided reference genes

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