Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 1.9e-234 815.5 402 100.0
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 3.0e-200 701.8 388 91.8
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 3.0e-200 701.8 388 91.8
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 2.5e-199 698.7 388 91.2
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 3.7e-198 694.9 387 90.4
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 8.2e-198 693.7 388 90.2
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 3.0e-184 648.7 394 83.2
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.0e-175 619.4 387 79.6
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 4.4e-175 618.2 387 80.6
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 4.2e-170 601.7 374 81.6
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 1.3e-166 590.1 379 78.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 1.6e-164 583.2 393 75.1
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 7.7e-164 580.9 394 74.6
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 2.0e-151 539.7 393 67.2
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 1.4e-133 480.3 395 59.5
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 2.7e-132 476.1 391 62.1
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 4.6e-132 475.3 393 60.8
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 3.9e-131 472.2 392 58.9
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 5.0e-131 471.9 391 61.1
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 6.6e-131 471.5 392 58.7
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 8.6e-131 471.1 396 58.6
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 8.6e-131 471.1 395 59.2
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 1.9e-130 469.9 391 58.6
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 1.9e-130 469.9 391 61.4
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.9e-130 469.9 390 60.3
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.9e-130 469.9 391 60.9
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 4.3e-130 468.8 391 58.6
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 2.1e-129 466.5 390 59.7
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 3.6e-129 465.7 390 60.8
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 4.7e-129 465.3 388 58.5
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 6.2e-129 464.9 386 60.6
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 1.4e-128 463.8 389 59.6
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 1.8e-128 463.4 395 56.5
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.8e-128 463.4 388 59.3
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 2.3e-128 463.0 395 58.2
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 2.3e-128 463.0 387 58.1
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.1e-128 462.6 392 57.4
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 4.0e-128 462.2 385 60.0
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 6.8e-128 461.5 386 60.1
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 6.8e-128 461.5 386 57.5
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.2e-127 460.7 387 59.4
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.2e-127 460.7 389 57.6
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 2.0e-127 459.9 397 57.9
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.0e-127 459.9 387 58.9
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 2.6e-127 459.5 386 60.4
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 2.6e-127 459.5 395 56.2
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 4.4e-127 458.8 401 58.6
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 5.8e-127 458.4 389 56.6
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 5.8e-127 458.4 386 56.7
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 1.3e-126 457.2 397 55.9
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.3e-126 457.2 387 60.5
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 3.7e-126 455.7 383 59.3
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 4.9e-126 455.3 401 58.4
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 6.4e-126 454.9 386 57.0
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 8.3e-126 454.5 387 55.0
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 1.1e-125 454.1 389 57.1
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.1e-125 454.1 387 59.7
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 1.9e-125 453.4 388 59.0
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 4.1e-125 452.2 383 59.8
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 1.2e-124 450.7 388 57.0
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.6e-124 450.3 388 57.5
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 2.1e-124 449.9 392 57.1
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.7e-124 449.5 388 57.0
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 3.5e-124 449.1 387 55.6
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 7.8e-124 448.0 388 56.7
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 3.9e-123 445.7 391 57.5
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 3.9e-123 445.7 393 54.5
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 5.1e-123 445.3 391 55.8
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 4.3e-122 442.2 393 56.0
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 1.4e-120 437.2 364 58.0
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 1.4e-120 437.2 364 58.0
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 2.0e-119 433.3 401 52.6
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 3.4e-119 432.6 392 53.6
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 3.2e-117 426.0 388 53.9
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 1.6e-116 423.7 390 55.9
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 2.1e-116 423.3 379 56.2
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 2.1e-116 423.3 388 53.4
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 4.6e-116 422.2 390 55.6
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.9e-114 416.8 391 54.2
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 7.3e-114 414.8 385 53.5
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 1.6e-113 413.7 400 54.2
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 3.1e-112 409.5 393 52.2
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 8.4e-110 401.4 387 54.8
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 1.1e-109 401.0 376 55.1
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.1e-108 396.7 399 51.6
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 4.6e-108 395.6 343 56.3
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 4.8e-105 385.6 399 50.9
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.5e-103 380.6 374 51.3
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 4.5e-103 379.0 391 48.6
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 2.3e-99 366.7 312 59.0
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.1e-98 364.4 358 52.8
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 8.4e-94 348.2 275 61.5
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 1.2e-92 344.4 389 47.3
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.2e-92 344.4 353 49.6
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 6.0e-92 342.0 354 50.6
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 2.1e-84 317.0 389 41.1
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.3e-83 314.3 242 61.6
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 5.1e-83 312.4 378 46.3
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 5.1e-75 285.8 267 53.9
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 6.3e-73 278.9 253 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.8e-72 277.3 403 36.0
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 3.4e-71 273.1 394 36.8
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 5.3e-64 249.2 187 62.6
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 2.6e-55 220.3 191 56.5
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 4.5e-55 219.5 158 65.2
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.5e-54 215.7 249 48.2
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.2e-53 213.4 190 57.9
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 2.9e-46 190.3 231 44.6
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 9.4e-45 185.3 194 53.6
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.3e-43 180.6 160 56.9
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 1.5e-42 177.9 200 49.5
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 6.3e-41 172.6 142 62.0
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.2e-39 168.3 429 28.7
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 1.7e-38 164.5 135 61.5
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-37 161.0 134 57.5
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 3.6e-36 156.8 358 28.8
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 3.6e-36 156.8 109 68.8
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 1.4e-35 154.8 238 37.4
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 3.0e-35 153.7 365 32.1
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 8.8e-35 152.1 175 46.9
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 3.7e-33 146.7 164 48.8
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.3e-30 138.3 139 55.4
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 1.1e-29 135.2 92 69.6
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 1.7e-25 121.3 92 67.4
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-24 118.6 88 62.5
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.3e-22 111.7 453 25.8
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 3.7e-17 93.6 97 44.3
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.4e-16 90.9 56 71.4
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 4.1e-16 90.1 241 29.9
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 3.6e-12 77.0 84 44.0
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.5e-07 60.5 54 55.6
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 6.0e-07 59.7 90 43.3
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 1.3e-06 58.5 72 52.8


User provided reference genes

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