Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 2.0e-200 702.2 343 100.0
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 1.9e-179 632.5 340 91.5
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 1.9e-179 632.5 340 91.5
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 6.8e-177 624.0 341 91.2
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 2.2e-175 619.0 364 85.4
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 5.4e-174 614.4 342 89.8
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 4.0e-169 598.2 350 84.3
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 6.8e-169 597.4 349 84.2
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 5.8e-168 594.3 349 84.8
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 1.7e-164 582.8 349 81.9
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 6.2e-162 574.3 380 76.1
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 3.2e-150 535.4 349 73.6
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 1.2e-149 533.5 366 72.4
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 3.8e-127 458.8 353 62.9
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 1.5e-123 446.8 349 62.5
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 3.3e-123 445.7 350 60.9
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 3.7e-122 442.2 350 60.3
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 6.2e-122 441.4 350 60.6
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 8.1e-122 441.0 352 59.7
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 1.7e-119 433.3 350 60.6
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 2.9e-119 432.6 348 59.8
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 3.8e-119 432.2 347 59.7
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 3.5e-117 425.6 348 58.6
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 3.0e-116 422.5 348 58.9
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 1.1e-115 420.6 352 59.1
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 1.9e-115 419.9 352 58.2
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 1.3e-114 417.2 344 59.6
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.1e-113 414.1 348 58.9
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 5.3e-113 411.8 351 56.4
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 2.2e-111 406.4 351 55.6
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 2.2e-111 406.4 347 56.5
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 3.8e-111 405.6 350 56.3
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 4.9e-111 405.2 349 55.0
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 6.5e-111 404.8 349 56.7
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 8.4e-111 404.4 348 56.6
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 2.5e-110 402.9 347 55.3
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 3.2e-110 402.5 350 55.4
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 3.2e-110 402.5 364 53.6
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 4.2e-110 402.1 352 56.2
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 7.1e-110 401.4 356 55.6
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 1.6e-109 400.2 350 54.3
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 2.1e-109 399.8 351 53.8
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 2.1e-109 399.8 347 55.3
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 2.1e-109 399.8 351 55.3
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 2.7e-109 399.4 345 57.1
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 7.9e-109 397.9 347 55.3
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 1.3e-108 397.1 343 55.4
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 1.8e-108 396.7 348 54.0
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 5.1e-108 395.2 339 55.2
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 5.1e-108 395.2 345 57.1
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 8.7e-108 394.4 352 54.3
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 1.1e-107 394.0 353 55.5
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 1.1e-107 394.0 348 54.6
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 4.3e-107 392.1 347 54.5
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 5.7e-107 391.7 347 54.5
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 9.7e-107 391.0 331 57.1
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 9.7e-107 391.0 331 57.1
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 9.7e-107 391.0 350 52.9
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 6.3e-106 388.3 350 55.1
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 1.1e-105 387.5 350 52.9
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 1.1e-105 387.5 328 54.9
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 1.8e-105 386.7 328 54.3
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 2.4e-105 386.3 351 54.4
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 2.4e-105 386.3 318 58.5
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 3.1e-105 386.0 363 54.3
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 5.3e-105 385.2 346 54.0
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 9.0e-105 384.4 346 55.2
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.5e-104 383.6 351 53.8
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 1.5e-104 383.6 321 56.1
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 3.4e-104 382.5 358 51.4
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 1.4e-102 377.1 340 54.7
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.2e-101 374.0 321 60.4
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 4.6e-101 372.1 326 54.9
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 1.0e-100 370.9 349 52.1
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 1.8e-100 370.2 196 83.7
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 5.1e-100 368.6 349 51.9
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 9.7e-99 364.4 345 51.6
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.7e-98 363.6 362 51.9
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 8.2e-98 361.3 348 50.0
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 1.1e-97 360.9 326 53.1
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 1.4e-97 360.5 275 60.4
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 6.9e-97 358.2 340 52.4
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 2.6e-96 356.3 317 56.2
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 2.2e-95 353.2 343 50.4
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 8.5e-95 351.3 346 52.6
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.5e-94 349.7 337 52.5
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 3.9e-92 342.4 274 62.8
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 8.2e-90 334.7 344 48.0
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 7.0e-89 331.6 348 47.7
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 1.0e-87 327.8 339 48.4
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 5.0e-87 325.5 315 52.4
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 6.5e-87 325.1 269 61.0
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 9.4e-86 321.2 252 62.7
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 3.6e-85 319.3 350 48.9
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 3.9e-84 315.8 345 49.0
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.3e-79 300.8 250 59.2
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 3.4e-75 286.2 344 45.1
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 7.5e-75 285.0 266 51.5
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.8e-73 280.4 249 57.0
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 5.3e-73 278.9 237 52.3
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 7.0e-73 278.5 305 49.5
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 8.0e-69 265.0 262 51.9
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 1.9e-62 243.8 200 57.0
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 1.2e-59 234.6 356 36.5
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 1.2e-56 224.6 317 40.7
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 7.8e-56 221.9 217 53.9
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 2.9e-50 203.4 245 46.9
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 2.0e-43 180.6 131 56.5
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 1.7e-42 177.6 126 62.7
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 2.1e-32 144.1 299 34.8
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 5.6e-30 136.0 100 60.0
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 7.6e-27 125.6 181 40.9
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 6.4e-26 122.5 144 41.0
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 5.3e-20 102.8 73 58.9
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 1.9e-14 84.3 70 60.0
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 2.8e-13 80.5 84 54.8


User provided reference genes

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