Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 5.5e-170 600.9 309 100.0
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 2.1e-153 545.8 310 92.3
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 1.8e-152 542.7 310 91.9
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 2.3e-152 542.3 310 92.3
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 2.3e-152 542.3 310 92.3
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 1.3e-150 536.6 310 91.6
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 6.0e-148 527.7 311 88.4
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 7.8e-148 527.3 310 88.4
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 1.7e-142 509.6 310 86.5
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 3.2e-141 505.4 311 85.9
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 1.6e-140 503.1 311 85.5
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 1.0e-139 500.4 309 85.1
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 1.0e-139 500.4 310 85.8
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 1.9e-138 496.1 311 83.9
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.5e-135 486.5 310 83.5
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 9.9e-135 483.8 311 83.0
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.9e-134 482.3 310 83.9
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 9.2e-133 477.2 311 82.0
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 5.1e-131 471.5 317 80.4
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 2.8e-121 439.1 311 77.5
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.2e-102 376.3 310 68.4
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.5e-79 298.9 294 60.5
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 8.2e-65 251.5 280 51.1
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 3.1e-64 249.6 268 50.4
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 3.5e-63 246.1 281 48.0
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 1.0e-62 244.6 292 53.1
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 8.5e-62 241.5 134 89.6
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 8.5e-62 241.5 134 89.6
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 1.2e-60 237.7 149 85.2
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.1e-60 236.9 297 52.9
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 8.0e-60 235.0 280 49.6
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 4.0e-59 232.6 284 46.5
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 8.8e-59 231.5 270 48.5
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 8.8e-59 231.5 260 51.5
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 3.4e-58 229.6 271 46.9
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 5.7e-58 228.8 277 49.1
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 9.8e-58 228.0 282 48.9
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 9.8e-58 228.0 276 46.4
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 2.2e-57 226.9 282 47.9
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 2.2e-57 226.9 282 48.6
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 3.7e-57 226.1 288 47.9
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 4.8e-57 225.7 150 79.3
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 4.8e-57 225.7 288 47.2
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 2.7e-55 219.9 283 47.7
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 2.7e-55 219.9 273 45.8
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 7.7e-55 218.4 283 47.7
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 7.7e-55 218.4 285 44.9
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 1.7e-54 217.2 288 43.8
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 8.5e-54 214.9 283 47.3
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.1e-53 214.5 273 45.1
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 1.9e-53 213.8 277 46.9
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 7.2e-53 211.8 310 43.5
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 7.2e-53 211.8 274 46.0
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 2.7e-52 209.9 302 45.7
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.4e-51 207.6 284 41.5
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 4.0e-51 206.1 298 44.3
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 8.8e-51 204.9 289 43.6
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 1.5e-50 204.1 115 88.7
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 2.0e-50 203.8 285 42.5
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 4.4e-50 202.6 285 44.6
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 5.7e-50 202.2 273 44.3
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 9.8e-50 201.4 293 45.1
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 9.8e-50 201.4 274 46.7
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 9.8e-50 201.4 296 43.2
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 3.7e-49 199.5 287 47.0
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 4.9e-49 199.1 286 44.1
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 8.3e-49 198.4 283 44.5
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 2.4e-48 196.8 266 46.6
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 7.0e-48 195.3 325 40.6
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 7.0e-48 195.3 254 46.1
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 2.0e-47 193.7 267 43.1
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 2.0e-47 193.7 269 45.0
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 7.7e-47 191.8 289 43.6
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 1.0e-46 191.4 285 43.9
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 1.3e-46 191.0 283 41.7
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 1.7e-46 190.7 279 44.8
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 1.7e-46 190.7 289 42.9
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 1.7e-46 190.7 284 45.8
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 2.3e-46 190.3 281 42.7
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 3.8e-46 189.5 279 44.8
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 1.1e-45 188.0 269 44.6
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 1.1e-45 188.0 271 43.9
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 3.3e-45 186.4 266 46.6
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 4.3e-45 186.0 265 43.8
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 4.3e-45 186.0 274 44.5
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 5.6e-45 185.7 282 42.2
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 7.3e-45 185.3 291 41.6
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 1.2e-44 184.5 266 44.4
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 1.2e-44 184.5 268 45.1
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 1.6e-44 184.1 301 39.9
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 2.8e-44 183.3 276 42.8
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 3.6e-44 183.0 260 42.3
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 6.1e-44 182.2 266 43.2
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 1.4e-43 181.0 274 43.4
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 4.0e-43 179.5 287 41.1
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 4.0e-43 179.5 276 44.6
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 4.0e-43 179.5 272 43.4
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 4.0e-43 179.5 274 44.2
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 5.2e-43 179.1 340 37.9
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 8.9e-43 178.3 285 41.4
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 2.6e-42 176.8 263 44.5
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.4e-42 176.4 214 46.7
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.3e-41 174.5 302 41.7
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 1.7e-41 174.1 292 39.7
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.9e-41 173.3 274 42.7
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 4.9e-41 172.6 285 42.8
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 6.4e-41 172.2 291 41.6
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 6.4e-41 172.2 260 42.3
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 8.3e-41 171.8 269 41.6
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 8.3e-41 171.8 269 42.8
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 8.3e-41 171.8 265 42.3
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 8.3e-41 171.8 269 42.0
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 8.3e-41 171.8 271 41.0
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 1.4e-40 171.0 223 48.4
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 1.8e-40 170.6 291 40.5
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 2.4e-40 170.2 291 41.2
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 2.4e-40 170.2 270 41.9
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 4.1e-40 169.5 291 41.6
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 1.2e-39 167.9 263 41.8
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 3.5e-39 166.4 279 41.2
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 5.9e-39 165.6 264 42.0
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 7.8e-39 165.2 269 38.3
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 7.8e-39 165.2 265 40.4
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 1.0e-38 164.9 264 42.0
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 1.3e-38 164.5 268 41.0
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 2.3e-38 163.7 247 44.5
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 8.6e-38 161.8 279 41.9
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 2.5e-37 160.2 212 42.9
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 4.3e-37 159.5 296 36.8
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 9.5e-37 158.3 286 36.7
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 1.8e-35 154.1 250 41.2
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 3.1e-35 153.3 213 43.2
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 5.2e-35 152.5 301 35.5
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.5e-34 151.0 263 38.8
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 2.0e-34 150.6 214 43.0
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 2.6e-34 150.2 284 38.7
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 9.8e-34 148.3 265 37.7
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 2.2e-33 147.1 266 38.3
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 6.4e-33 145.6 254 42.1
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 2.4e-32 143.7 258 38.8
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 4.7e-28 129.4 278 35.3
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 1.4e-27 127.9 116 56.0
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 3.4e-26 123.2 270 35.6
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 3.4e-26 123.2 173 37.0
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 3.4e-26 123.2 277 35.0
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 5.8e-26 122.5 281 34.2
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 1.3e-25 121.3 116 51.7
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 8.3e-25 118.6 279 33.3
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.4e-24 117.9 278 36.0
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.4e-24 117.9 278 36.0
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 4.3e-21 106.3 109 48.6
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 1.4e-19 101.3 266 32.0
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 8.9e-19 98.6 110 46.4
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 1.2e-18 98.2 135 40.7
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 6.4e-17 92.4 145 37.9
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 2.4e-16 90.5 174 36.8
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 1.0e-14 85.1 165 39.4
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 3.9e-14 83.2 74 51.4
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 2.4e-08 63.9 76 47.4
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 7.8e-07 58.9 271 28.8


User provided reference genes

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