Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08782 Brassica carinata HOM05D004856 ORTHO05D005710 1.0e-66 256.5 122 100.0
BcaB02g08780 Brassica carinata HOM05D004856 ORTHO05D005710 1.1e-44 183.3 97 94.8
A05p00530 Brassica napus HOM05D004856 ORTHO05D005710 6.0e-43 177.6 96 92.7
BcaB06g29450 Brassica carinata HOM05D004856 ORTHO05D005710 7.8e-43 177.2 95 91.6
C04p72740 Brassica napus HOM05D004856 ORTHO05D005710 2.3e-42 175.6 97 87.6
BolC4t28755H Brassica oleracea HOM05D004856 ORTHO05D005710 2.3e-42 175.6 97 87.6
Sp4g29310 Schrenkiella parvula HOM05D004856 ORTHO05D005710 2.3e-42 175.6 97 87.6
C04p00570 Brassica napus HOM05D004856 ORTHO05D005710 5.1e-42 174.5 96 90.6
BcaC02g06969 Brassica carinata HOM05D004856 ORTHO05D005710 6.6e-42 174.1 97 86.6
BraA05t19051Z Brassica rapa HOM05D004856 ORTHO05D005710 6.6e-42 174.1 96 89.6
Carub.0004s3009 Capsella rubella HOM05D004856 ORTHO05D005710 2.1e-40 169.1 107 78.5
AT2G47370 Arabidopsis thaliana HOM05D004856 ORTHO05D005710 2.8e-40 168.7 107 77.6
BcaC02g12569 Brassica carinata HOM05D004856 ORTHO05D005710 2.8e-40 168.7 96 89.6
AL3G49500 Arabidopsis lyrata HOM05D004856 ORTHO05D005710 4.7e-40 167.9 107 76.6
BolC4t21691H Brassica oleracea HOM05D004856 ORTHO05D005710 6.2e-40 167.5 96 88.5
AT2G16760 Arabidopsis thaliana HOM05D004856 ORTHO05D005710 1.4e-39 166.4 107 75.7
Thhalv10001544m.g Eutrema salsugineum HOM05D004856 ORTHO05D005710 1.8e-39 166.0 95 85.3
CARHR142750 Cardamine hirsuta HOM05D004856 ORTHO05D005710 8.9e-39 163.7 96 82.3
Carub.0003s3057 Capsella rubella HOM05D004856 ORTHO05D005710 2.0e-38 162.5 96 81.2
AL4G46930 Arabidopsis lyrata HOM05D004856 ORTHO05D005710 8.3e-37 157.1 96 82.3
BcaB01g01454 Brassica carinata HOM05D004856 ORTHO05D005710 2.4e-36 155.6 97 76.3
SpUn0121_0030 Schrenkiella parvula HOM05D004856 ORTHO05D005710 9.2e-36 153.7 105 68.6
BraA09t38442Z Brassica rapa HOM05D004856 ORTHO05D005710 2.7e-35 152.1 98 76.5
THA.LOC104802153 Tarenaya hassleriana HOM05D004856 ORTHO05D005710 5.1e-34 147.9 98 73.5
Aa31LG1G28660 Aethionema arabicum HOM05D004856 ORTHO05D005710 8.6e-34 147.1 97 70.1
BcaC04g21021 Brassica carinata HOM05D004856 ORTHO05D005710 5.8e-30 134.4 88 73.9
Glyma.10G012700 Glycine max HOM05D004856 ORTHO05D005710 1.6e-27 126.3 99 64.6
C09p36580 Brassica napus HOM05D004856 ORTHO05D005710 6.0e-27 124.4 78 78.2
Prupe.8G266600 Prunus persica HOM05D004856 ORTHO05D005710 1.7e-26 122.9 98 64.3
Ciclev10021076m.g Citrus clementina HOM05D004856 ORTHO05D005710 3.0e-26 122.1 93 65.6
Manes.05G003800 Manihot esculenta HOM05D004856 ORTHO05D005710 5.1e-26 121.3 98 60.2
Sc05g0000400 Simmondsia chinensis HOM05D004856 ORTHO05D005710 1.9e-25 119.4 98 62.2
Glyma.02G012300 Glycine max HOM05D004856 ORTHO05D005710 3.3e-25 118.6 99 59.6
Gohir.A08G119500 Gossypium hirsutum HOM05D004856 ORTHO05D005710 4.3e-25 118.2 99 59.6
MD03G1294500 Malus domestica HOM05D004856 ORTHO05D005710 4.3e-25 118.2 98 61.2
AUR62024646 Chenopodium quinoa HOM05D004856 ORTHO05D005710 9.6e-25 117.1 98 53.1
Medtr1g086990 Medicago truncatula HOM05D004856 ORTHO05D005710 9.6e-25 117.1 99 59.6
Thecc.01G313900 Theobroma cacao HOM05D004856 ORTHO05D005710 9.6e-25 117.1 99 59.6
Cfa005792 Carpinus fangiana HOM05D004856 ORTHO05D005710 1.3e-24 116.7 98 57.1
Gorai.004G144500 Gossypium raimondii HOM05D004856 ORTHO05D005710 1.6e-24 116.3 99 59.6
Gohir.D08G140400 Gossypium hirsutum HOM05D004856 ORTHO05D005710 2.8e-24 115.5 99 58.6
PGR083G2512 Punica granatum HOM05D004856 ORTHO05D005710 2.8e-24 115.5 98 57.1
TAR633G1097 Trochodendron aralioides HOM05D004856 ORTHO05D005710 2.8e-24 115.5 98 56.1
Lj5g0024022 Lotus japonicus HOM05D004856 ORTHO05D005710 3.6e-24 115.2 99 58.6
Nn4g25592 Nelumbo nucifera HOM05D004856 ORTHO05D005710 3.6e-24 115.2 92 62.0
Psat6g161520 Pisum sativum HOM05D004856 ORTHO05D005710 3.6e-24 115.2 100 62.0
Atru.chr5.992_Atru.chr5.993 Acer truncatum HOM05D004856 ORTHO05D005710 4.8e-24 114.8 99 57.6
AUR62011799 Chenopodium quinoa HOM05D004856 ORTHO05D005710 4.8e-24 114.8 98 52.0
Haze_05050 Corylus avellana HOM05D004856 ORTHO05D005710 4.8e-24 114.8 98 56.1
Potri.014G120300 Populus trichocarpa HOM05D004856 ORTHO05D005710 4.8e-24 114.8 97 57.7
CsaV3_4G001230 Cucumis sativus L. HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 57.1
FvH4_5g39130 Fragaria vesca HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
FAN04G1954 Fragaria x ananassa HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
FAN08G2325 Fragaria x ananassa HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
FAN13G1005 Fragaria x ananassa HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
FAN18G0331 Fragaria x ananassa HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
FAN18G2737 Fragaria x ananassa HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 55.1
Manes.01G228100 Manihot esculenta HOM05D004856 ORTHO05D005710 6.2e-24 114.4 95 56.8
Sed0019620 Sechium edule HOM05D004856 ORTHO05D005710 6.2e-24 114.4 98 57.1
Phvul.007G214000 Phaseolus vulgaris HOM05D004856 ORTHO05D005710 8.1e-24 114.0 85 67.1
RcHm_v2.0_Chr7g0241121 Rosa chinensis HOM05D004856 ORTHO05D005710 8.1e-24 114.0 98 57.1
Ah.11g049210 Amaranthus hybridus HOM05D004856 ORTHO05D005710 1.4e-23 113.2 98 53.1
MSTRG.21688 Avicennia marina HOM05D004856 ORTHO05D005710 1.4e-23 113.2 94 60.6
CANSAT25G0248 Cannabis sativa HOM05D004856 ORTHO05D005710 1.4e-23 113.2 99 58.6
Sabra14G0089300 Salix brachista HOM05D004856 ORTHO05D005710 1.4e-23 113.2 97 56.7
Cpa.g.sc18.47 Carica papaya HOM05D004856 ORTHO05D005710 1.8e-23 112.8 98 59.2
CiPaw.08G089600 Carya illinoinensis HOM05D004856 ORTHO05D005710 1.8e-23 112.8 98 54.1
Eucgr.H01013 Eucalyptus grandis HOM05D004856 ORTHO05D005710 1.8e-23 112.8 93 61.3
EL10As5g23537 Beta vulgaris HOM05D004856 ORTHO05D005710 3.1e-23 112.1 98 53.1
MELO3C017915.2 Cucumis melo HOM05D004856 ORTHO05D005710 3.1e-23 112.1 97 56.7
Eucgr.H01012 Eucalyptus grandis HOM05D004856 ORTHO05D005710 3.1e-23 112.1 93 61.3
Dinv33120 Davidia involucrata HOM05D004856 ORTHO05D005710 4.0e-23 111.7 93 60.2
GSVIVG01028122001 Vitis vinifera HOM05D004856 ORTHO05D005710 4.0e-23 111.7 93 61.3
ClCG10G011420 Citrullus lanatus HOM05D004856 ORTHO05D005710 5.3e-23 111.3 98 55.1
Duzib133G0131 Durio zibethinus HOM05D004856 ORTHO05D005710 5.3e-23 111.3 99 56.6
QL12p019858 Quercus lobata HOM05D004856 ORTHO05D005710 6.9e-23 110.9 98 58.2
CSS0029246 Camellia sinensis var. sinensis HOM05D004856 ORTHO05D005710 9.0e-23 110.5 94 60.6
TPR.G38696 Trifolium pratense HOM05D004856 ORTHO05D005710 9.0e-23 110.5 99 57.6
Aqoxy2G02758 Aquilegia oxysepala HOM05D004856 ORTHO05D005710 1.2e-22 110.2 94 58.5
Hma1.2p1_0486F.1_g163310 Hydrangea macrophylla HOM05D004856 ORTHO05D005710 1.5e-22 109.8 97 58.8
PSO210G6845 Papaver somniferum HOM05D004856 ORTHO05D005710 1.5e-22 109.8 87 62.1
Ca_10281_v3 Cicer arietinum L. HOM05D004856 ORTHO05D005710 2.0e-22 109.4 99 56.6
VMungo0720G2414 Vigna mungo HOM05D004856 ORTHO05D005710 2.0e-22 109.4 86 66.3
arahy.Tifrunner.gnm1.ann1.KTVD8H Arachis hypogaea HOM05D004856 ORTHO05D005710 2.6e-22 109.0 99 56.6
Migut.D00081 Erythranthe guttata HOM05D004856 ORTHO05D005710 3.4e-22 108.6 98 58.2
CiPaw.07G117800 Carya illinoinensis HOM05D004856 ORTHO05D005710 5.8e-22 107.8 97 53.6
PSO761G0661 Papaver somniferum HOM05D004856 ORTHO05D005710 5.8e-22 107.8 89 60.7
Duzib138G0989 Durio zibethinus HOM05D004856 ORTHO05D005710 7.6e-22 107.5 98 55.1
Hund09634 Selenicereus undatus HOM05D004856 ORTHO05D005710 7.6e-22 107.5 93 57.0
Actinidia20992 Actinidia chinensis HOM05D004856 ORTHO05D005710 9.9e-22 107.1 94 57.4
Cc01_g21460 Coffea canephora HOM05D004856 ORTHO05D005710 9.9e-22 107.1 88 62.5
Peaxi162Scf00691g00316 Petunia axillaris HOM05D004856 ORTHO05D005710 9.9e-22 107.1 94 55.3
PGSC0003DMG400009011 Solanum tuberosum HOM05D004856 ORTHO05D005710 1.3e-21 106.7 98 52.0
Ah.02g112330 Amaranthus hybridus HOM05D000043 ORTHO05D005710 1.7e-21 106.3 93 50.5
Gohir.D11G113900 Gossypium hirsutum HOM05D004856 ORTHO05D005710 1.7e-21 106.3 100 55.0
Gorai.007G122500 Gossypium raimondii HOM05D004856 ORTHO05D005710 1.7e-21 106.3 100 55.0
Aqoxy2G02760 Aquilegia oxysepala HOM05D004856 ORTHO05D005710 2.2e-21 105.9 94 57.4
vmacro15110 Vaccinium macrocarpon HOM05D004856 ORTHO05D005710 2.2e-21 105.9 98 54.1
Zm00001eb396100 Zea mays HOM05D004856 ORTHO05D005710 2.2e-21 105.9 85 63.5
Nitab4.5_0003540g0060 Nicotiana tabacum HOM05D004856 ORTHO05D005710 2.9e-21 105.5 98 51.0
Solyc01g079410.3 Solanum lycopersicum HOM05D004856 ORTHO05D005710 2.9e-21 105.5 98 52.0
Sopen01g031200 Solanum pennellii HOM05D004856 ORTHO05D005710 2.9e-21 105.5 98 51.0
CAN.G100.82 Capsicum annuum HOM05D004856 ORTHO05D005710 3.8e-21 105.1 98 51.0
Gohir.D11G114000 Gossypium hirsutum HOM05D004856 ORTHO05D005710 3.8e-21 105.1 100 54.0
Gorai.007G122600 Gossypium raimondii HOM05D004856 ORTHO05D005710 3.8e-21 105.1 100 54.0
Ciclev10024542m.g Citrus clementina HOM05D004856 ORTHO05D005710 6.4e-21 104.4 103 54.4
Nitab4.5_0005458g0010 Nicotiana tabacum HOM05D004856 ORTHO05D005710 6.4e-21 104.4 98 51.0
Rhsim01G0291100 Rhododendron simsii HOM05D004856 ORTHO05D005710 6.4e-21 104.4 98 55.1
Hund02941 Selenicereus undatus HOM05D004856 ORTHO05D005710 6.4e-21 104.4 97 52.6
Actinidia25852 Actinidia chinensis HOM05D004856 ORTHO05D005710 8.4e-21 104.0 94 56.4
Lj2C1206T9 Lonicera japonica HOM05D004856 ORTHO05D005710 8.4e-21 104.0 96 52.1
TWI18G0311 Tripterygium wilfordii HOM05D004856 ORTHO05D005710 1.4e-20 103.2 98 52.0
Zm00001eb014720 Zea mays HOM05D004856 ORTHO05D005710 2.4e-20 102.4 85 65.9
Oeu047395.1 Olea europaea HOM05D004856 ORTHO05D005710 4.2e-20 101.7 98 52.0
Lalb_Chr02g0146841 Lupinus albus HOM05D004856 ORTHO05D005710 5.4e-20 101.3 99 53.5
Medtr3g096580 Medicago truncatula HOM05D004856 ORTHO05D005710 5.4e-20 101.3 92 56.5
HPP92_002699 Vanilla planifolia HOM05D000336 ORTHO05D002301 7.1e-20 100.9 93 55.9
Actinidia17900 Actinidia chinensis HOM05D004856 ORTHO05D005710 9.3e-20 100.5 96 52.1
MBI19_g07236_MAGBIO Magnolia biondii HOM05D004856 ORTHO05D005710 9.3e-20 100.5 93 54.8
CDE11G1147 Ceratophyllum demersum HOM05D004856 ORTHO05D005710 1.6e-19 99.8 96 50.0
COL.COLO4_23228 Corchorus olitorius HOM05D000043 ORTHO05D005710 2.1e-19 99.4 81 56.8
SGA_v2.0_scaffold376G50285 Striga asiatica HOM05D004856 ORTHO05D005710 2.7e-19 99.0 96 53.1
Oeu014942.1 Olea europaea HOM05D004856 ORTHO05D005710 3.5e-19 98.6 98 52.0
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 4.6e-19 98.2 86 59.3
SalBow3G3328 Salvia bowleyana HOM05D004856 ORTHO05D005710 7.9e-19 97.4 92 54.3
Lalb_Chr21g0309601 Lupinus albus HOM05D004856 ORTHO05D005710 2.3e-18 95.9 99 51.5
TWI75G1211 Tripterygium wilfordii HOM05D004856 ORTHO05D005710 2.3e-18 95.9 84 56.0
Gohir.A11G109400 Gossypium hirsutum HOM05D004856 ORTHO05D005710 3.0e-18 95.5 100 50.0
HanXRQChr04g0106131 Helianthus annuus HOM05D004856 ORTHO05D005710 3.9e-18 95.1 98 51.0
HanXRQChr06g0168131 Helianthus annuus HOM05D004856 ORTHO05D005710 2.5e-17 92.4 98 50.0
Os03g0307400 Oryza sativa ssp. japonica HOM05D004856 ORTHO05D005710 1.6e-16 89.7 84 57.1
Lsat_1_v5_gn_8_166741 Lactuca sativa HOM05D004856 ORTHO05D005710 3.6e-16 88.6 99 49.5
ATR0796G226 Amborella trichopoda HOM05D004856 ORTHO05D005710 4.8e-16 88.2 97 48.5
DCAR_005754 Daucus carota HOM05D004856 ORTHO05D005710 6.2e-16 87.8 96 45.8
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.1e-15 87.0 98 45.9
Os10g0443000 Oryza sativa ssp. japonica HOM05D004856 ORTHO05D005710 1.8e-15 86.3 84 56.0
Lj2A1206T28 Lonicera japonica HOM05D004856 ORTHO05D005710 2.6e-14 82.4 85 48.2
unitig_62.g23907 Utricularia gibba HOM05D004856 ORTHO05D005710 9.9e-14 80.5 71 60.6
Lj1A16T42 Lonicera japonica HOM05D004856 ORTHO05D005710 3.8e-13 78.6 76 48.7
TAR362G0385 Trochodendron aralioides HOM05D004856 ORTHO05D005710 3.8e-13 78.6 63 58.7
Ciclev10023964m.g Citrus clementina HOM05D004856 ORTHO05D005710 6.0e-11 71.2 76 44.7
AagrBONN_evm.TU.Sc2ySwM_368.2572 Anthoceros agrestis HOM05D004856 ORTHO05D005710 2.5e-09 65.9 80 46.2
Mapoly0071s0020 Marchantia polymorpha HOM05D004856 ORTHO05D005710 2.5e-09 65.9 83 38.6
SMO119G0186 Selaginella moellendorffii HOM05D004856 ORTHO05D005710 9.6e-09 63.9 78 39.7
Rhsim11G0030200 Rhododendron simsii HOM05D004856 ORTHO05D005710 6.2e-08 61.2 53 56.6
A09p28800 Brassica napus HOM05D004856 ORTHO05D005710 6.9e-07 57.8 35 74.3


User provided reference genes

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