Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08732 Brassica carinata HOM05D007078 ORTHO05D008745 1.2e-105 386.7 218 100.0
A05p00060 Brassica napus HOM05D007078 ORTHO05D008745 2.9e-88 328.9 218 80.3
BraA05t19002Z Brassica rapa HOM05D007078 ORTHO05D008745 2.9e-88 328.9 218 80.3
BcaC02g12558 Brassica carinata HOM05D007078 ORTHO05D008745 1.1e-87 327.0 218 79.4
BolSC55t61232H Brassica oleracea HOM05D007078 ORTHO05D008745 1.1e-87 327.0 218 79.4
BNapus_Darmor_BZH_scaffold_188p00040 Brassica napus HOM05D007078 ORTHO05D008745 3.6e-83 312.0 246 70.3
Sp4g29960 Schrenkiella parvula HOM05D007078 ORTHO05D008745 2.0e-81 306.2 222 75.2
Thhalv10001627m.g Eutrema salsugineum HOM05D007078 ORTHO05D008745 8.4e-80 300.8 221 73.8
AT2G48070 Arabidopsis thaliana HOM05D007078 ORTHO05D008745 3.9e-77 292.0 207 73.4
AL4G47660 Arabidopsis lyrata HOM05D007078 ORTHO05D008745 1.2e-75 287.0 204 74.0
Carub.0004s3077 Capsella rubella HOM05D007078 ORTHO05D008745 2.8e-75 285.8 200 81.0
CARHR143460 Cardamine hirsuta HOM05D007078 ORTHO05D008745 2.6e-73 279.3 143 93.0
THA.LOC104823061 Tarenaya hassleriana HOM05D007078 ORTHO05D008745 4.4e-73 278.5 229 65.9
Gorai.004G084200 Gossypium raimondii HOM05D007078 ORTHO05D008745 5.6e-68 261.5 226 61.5
Gohir.D08G078400 Gossypium hirsutum HOM05D007078 ORTHO05D008745 1.6e-67 260.0 226 61.1
Eucgr.K03409 Eucalyptus grandis HOM05D007078 ORTHO05D008745 2.1e-67 259.6 216 63.9
Cpa.g.sc9.128 Carica papaya HOM05D007078 ORTHO05D008745 3.6e-67 258.8 143 83.9
EL10Ac7g17029 Beta vulgaris HOM05D007078 ORTHO05D008745 6.2e-67 258.1 144 83.3
Potri.014G137300 Populus trichocarpa HOM05D007078 ORTHO05D008745 6.2e-67 258.1 144 82.6
Dinv11266 Davidia involucrata HOM05D007078 ORTHO05D008745 8.1e-67 257.7 144 82.6
Nn3g21178 Nelumbo nucifera HOM05D007078 ORTHO05D008745 8.1e-67 257.7 144 82.6
CsaV3_7G028490 Cucumis sativus L. HOM05D007078 ORTHO05D008745 1.4e-66 256.9 143 84.6
TWI59G1055 Tripterygium wilfordii HOM05D007078 ORTHO05D008745 1.8e-66 256.5 143 82.5
Sed0016724 Sechium edule HOM05D007078 ORTHO05D008745 2.4e-66 256.1 144 84.7
MELO3C015872.2 Cucumis melo HOM05D007078 ORTHO05D008745 4.0e-66 255.4 143 84.6
Prupe.8G247900 Prunus persica HOM05D007078 ORTHO05D008745 5.3e-66 255.0 140 84.3
Ciclev10022169m.g Citrus clementina HOM05D007078 ORTHO05D008745 6.9e-66 254.6 144 83.3
Duzib138G1888 Durio zibethinus HOM05D007078 ORTHO05D008745 6.9e-66 254.6 143 82.5
Lsat_1_v5_gn_9_1840 Lactuca sativa HOM05D007078 ORTHO05D008745 6.9e-66 254.6 141 85.1
Cfa006079 Carpinus fangiana HOM05D007078 ORTHO05D008745 9.0e-66 254.2 143 81.1
Manes.05G071800 Manihot esculenta HOM05D007078 ORTHO05D008745 9.0e-66 254.2 144 82.6
PGR044G0767 Punica granatum HOM05D007078 ORTHO05D008745 9.0e-66 254.2 144 82.6
QL12p022959 Quercus lobata HOM05D007078 ORTHO05D008745 2.0e-65 253.1 143 81.1
CiPaw.07G095800 Carya illinoinensis HOM05D007078 ORTHO05D008745 2.6e-65 252.7 144 81.2
CANSAT25G2561 Cannabis sativa HOM05D007078 ORTHO05D008745 3.4e-65 252.3 143 83.2
TAR362G1057 Trochodendron aralioides HOM05D007078 ORTHO05D008745 4.5e-65 251.9 144 80.6
Aa31LG1G29480 Aethionema arabicum HOM05D007078 ORTHO05D008745 5.8e-65 251.5 133 89.5
ATR0626G125 Amborella trichopoda HOM05D007078 ORTHO05D008745 7.6e-65 251.1 140 82.1
Ca_08555_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 1.3e-64 250.4 206 61.7
GSVIVG01011060001 Vitis vinifera HOM05D007078 ORTHO05D008745 1.3e-64 250.4 144 81.2
DCAR_018382 Daucus carota HOM05D007078 ORTHO05D008745 1.7e-64 250.0 143 81.1
ECA247G1342 Erigeron canadensis HOM05D007078 ORTHO05D008745 2.2e-64 249.6 141 83.0
MD03G1271700 Malus domestica HOM05D007078 ORTHO05D008745 2.2e-64 249.6 143 82.5
CSS0036917 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 2.9e-64 249.2 140 81.4
Aqoxy5G00564 Aquilegia oxysepala HOM05D007078 ORTHO05D008745 3.8e-64 248.8 142 80.3
arahy.Tifrunner.gnm1.ann1.9GKU3H Arachis hypogaea HOM05D007078 ORTHO05D008745 3.8e-64 248.8 143 79.0
arahy.Tifrunner.gnm1.ann1.ERKA9X Arachis hypogaea HOM05D007078 ORTHO05D008745 3.8e-64 248.8 143 79.0
Psat3g066400 Pisum sativum HOM05D007078 ORTHO05D008745 3.8e-64 248.8 143 79.0
CSS0044942 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 4.9e-64 248.4 140 81.4
CDE12G0236 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 4.9e-64 248.4 145 80.0
FvH4_2g24170 Fragaria vesca HOM05D007078 ORTHO05D008745 4.9e-64 248.4 143 82.5
Atru.chr5.1330 Acer truncatum HOM05D007078 ORTHO05D008745 6.4e-64 248.1 143 81.8
FAN27G0292 Fragaria x ananassa HOM05D007078 ORTHO05D008745 6.4e-64 248.1 143 82.5
RcHm_v2.0_Chr6g0291981 Rosa chinensis HOM05D007078 ORTHO05D008745 8.4e-64 247.7 143 81.8
HanXRQChr15g0466581 Helianthus annuus HOM05D007078 ORTHO05D008745 1.1e-63 247.3 144 80.6
Os05g0404400 Oryza sativa ssp. japonica HOM05D007078 ORTHO05D008745 1.1e-63 247.3 141 80.9
Hma1.2p1_0628F.1_g191760 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 1.9e-63 246.5 143 78.3
Lj1g0026447 Lotus japonicus HOM05D007078 ORTHO05D008745 1.9e-63 246.5 205 61.5
Medtr7g094220 Medicago truncatula HOM05D007078 ORTHO05D008745 2.4e-63 246.1 143 80.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 3.2e-63 245.7 137 83.2
Cc09_g03260 Coffea canephora HOM05D007078 ORTHO05D008745 3.2e-63 245.7 142 80.3
Glyma.19G152600 Glycine max HOM05D007078 ORTHO05D008745 4.2e-63 245.4 143 78.3
PGR142G0265 Punica granatum HOM05D007078 ORTHO05D008745 7.1e-63 244.6 144 79.2
VMungo1383G1152 Vigna mungo HOM05D007078 ORTHO05D008745 9.3e-63 244.2 143 76.9
PSO210G6132 Papaver somniferum HOM05D007078 ORTHO05D008745 1.2e-62 243.8 144 77.8
Sc24g0004060 Simmondsia chinensis HOM05D007078 ORTHO05D008745 2.1e-62 243.0 135 84.4
Haze_04771 Corylus avellana HOM05D007078 ORTHO05D008745 2.7e-62 242.7 137 82.5
PSO832G3632 Papaver somniferum HOM05D007078 ORTHO05D008745 3.5e-62 242.3 144 77.1
TPR.G32805 Trifolium pratense HOM05D007078 ORTHO05D008745 3.5e-62 242.3 143 78.3
Migut.D00250 Erythranthe guttata HOM05D007078 ORTHO05D008745 6.0e-62 241.5 144 76.4
Phvul.001G147500 Phaseolus vulgaris HOM05D007078 ORTHO05D008745 6.0e-62 241.5 143 76.2
Nitab4.5_0005757g0030 Nicotiana tabacum HOM05D007078 ORTHO05D008745 7.9e-62 241.1 211 57.3
Oeu047893.1 Olea europaea HOM05D007078 ORTHO05D008745 1.3e-61 240.4 208 60.1
Solyc05g055850.3 Solanum lycopersicum HOM05D007078 ORTHO05D008745 1.3e-61 240.4 141 79.4
FAN15G0223 Fragaria x ananassa HOM05D007078 ORTHO05D008745 1.8e-61 240.0 138 81.9
Sopen05g034250 Solanum pennellii HOM05D007078 ORTHO05D008745 3.0e-61 239.2 138 80.4
PGSC0003DMG400023469 Solanum tuberosum HOM05D007078 ORTHO05D008745 3.0e-61 239.2 138 80.4
MD11G1292300 Malus domestica HOM05D007078 ORTHO05D008745 3.9e-61 238.8 143 80.4
Nitab4.5_0001436g0040 Nicotiana tabacum HOM05D007078 ORTHO05D008745 8.7e-61 237.7 211 56.4
unitig_0.g636 Utricularia gibba HOM05D007078 ORTHO05D008745 8.7e-61 237.7 133 83.5
Lalb_Chr01g0020251 Lupinus albus HOM05D007078 ORTHO05D008745 1.1e-60 237.3 139 77.7
Ah.08g209880 Amaranthus hybridus HOM05D007078 ORTHO05D008745 1.9e-60 236.5 133 83.5
vmacro02537 Vaccinium macrocarpon HOM05D007078 ORTHO05D008745 3.3e-60 235.7 135 79.3
AUR62026362 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.3e-60 235.3 129 85.3
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.3e-60 235.3 134 79.9
Mapoly0037s0112 Marchantia polymorpha HOM05D007078 ORTHO05D008745 7.4e-60 234.6 138 79.0
AagrBONN_evm.TU.Sc2ySwM_117.1018 Anthoceros agrestis HOM05D007078 ORTHO05D008745 2.1e-59 233.0 141 75.9
Thecc.01G285900 Theobroma cacao HOM05D007078 ORTHO05D008745 6.2e-59 231.5 130 83.1
Glyma.03G149600 Glycine max HOM05D007078 ORTHO05D008745 1.1e-58 230.7 135 77.8
Pp3c24_17730 Physcomitrium patens HOM05D007078 ORTHO05D008745 1.4e-58 230.3 143 75.5
Lj1C43T3 Lonicera japonica HOM05D007078 ORTHO05D008745 5.8e-57 224.9 131 79.4
Sabra14G0103700 Salix brachista HOM05D007078 ORTHO05D008745 2.2e-56 223.0 132 79.5
FAN24G3201 Fragaria x ananassa HOM05D007078 ORTHO05D008745 6.4e-56 221.5 131 80.2
SMO358G0655 Selaginella moellendorffii HOM05D007078 ORTHO05D008745 4.2e-55 218.8 140 70.7
CBR_g32237 Chara braunii HOM05D007078 ORTHO05D008745 3.1e-50 202.6 139 66.2
CDE01G0430 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 2.4e-42 176.4 98 78.6
MCO10G051 Micromonas commoda HOM05D007078 ORTHO05D008745 8.5e-40 167.9 129 60.5
Oeu006229.1 Olea europaea HOM05D007078 ORTHO05D008745 1.1e-39 167.5 90 82.2
Cre03.g145207 Chlamydomonas reinhardtii HOM05D007078 ORTHO05D008745 2.5e-39 166.4 137 54.0
ClCG09G006760 Citrullus lanatus HOM05D007078 ORTHO05D008745 8.7e-37 157.9 135 61.5
MBI19_g21637_MAGBIO Magnolia biondii HOM05D007078 ORTHO05D008745 5.3e-34 148.7 132 59.8
SGA_v2.0_scaffold11G05787 Striga asiatica HOM05D007078 ORTHO05D008745 1.2e-33 147.5 136 55.1
Gohir.A08G070800 Gossypium hirsutum HOM05D007078 ORTHO05D008745 5.9e-33 145.2 161 52.2
PRCOL_00000964 Prasinoderma coloniale HOM05D007078 ORTHO05D008745 2.2e-32 143.3 122 60.7
Actinidia00723 Actinidia chinensis HOM05D007078 ORTHO05D008745 5.5e-31 138.7 75 80.0
SEGI_07843 Sequoiadendron giganteum HOM05D007078 ORTHO05D008745 3.6e-30 136.0 78 79.5
Ca_08589_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 6.1e-30 135.2 141 52.5
Zm00001eb287740 Zea mays HOM05D007078 ORTHO05D008745 1.0e-29 134.4 76 80.3
HPP92_019174 Vanilla planifolia HOM05D007078 ORTHO05D008745 2.3e-29 133.3 78 76.9
Peaxi162Scf00156g00061 Petunia axillaris HOM05D007078 ORTHO05D008745 9.7e-28 127.9 72 81.9
PGR142G2005 Punica granatum HOM05D007078 ORTHO05D008745 1.1e-26 124.4 78 78.2
Actinidia24309 Actinidia chinensis HOM05D007078 ORTHO05D008745 2.1e-22 110.2 68 70.6
Hma1.2p1_0628F.1_g191770 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 2.2e-19 100.1 56 78.6


User provided reference genes

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