Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 2125.9 1089 100.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 2012.3 1064 96.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 2006.5 1067 95.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1998.4 1077 94.8
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1996.5 1060 95.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1994.2 1058 95.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1946.8 1094 91.0
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1898.6 1104 88.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1838.9 1073 87.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1835.5 1046 88.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1825.1 1036 88.9
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1810.0 1041 87.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1718.4 1117 80.1
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1617.4 980 83.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1587.8 1096 75.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1422.9 1100 66.7
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1091 66.4
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1409.4 1101 65.9
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1098 65.8
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1403.7 1103 65.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1098 65.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1399.0 1106 64.6
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1395.6 1088 65.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1391.3 1098 65.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1384.8 1061 65.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1367.8 1099 63.3
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1367.1 1039 66.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1365.5 1104 63.3
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1363.2 1098 63.6
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1362.8 1107 63.4
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1362.4 1099 63.3
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1360.1 1088 64.7
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1357.4 1002 68.1
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1348.2 1094 62.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1082 65.0
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1039 64.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1341.6 1086 63.4
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1338.9 1106 62.6
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1328.5 1102 62.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1328.2 1093 62.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1324.7 1044 63.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1322.4 1097 62.0
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1318.1 1099 61.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1317.8 1109 62.6
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1313.9 1126 61.5
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1137 60.1
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1054 62.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1295.0 969 67.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1294.3 1080 60.5
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1288.5 1089 61.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1096 60.8
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1285.8 1099 60.6
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 1102 60.7
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1104 61.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1280.0 1096 59.7
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1278.1 1079 60.5
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1277.3 1065 61.1
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1273.8 1096 60.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1271.1 1088 60.6
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1264.6 1097 59.6
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1264.6 1209 56.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1086 60.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1112 58.5
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1260.4 1102 61.2
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1074 60.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1258.4 1106 60.4
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1258.0 1041 61.7
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1257.7 1096 59.5
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1256.5 1100 59.7
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1255.7 1128 57.7
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1254.6 1096 59.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1254.2 1097 59.5
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1250.3 1108 59.1
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1246.1 1098 59.4
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1098 58.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1243.8 1035 60.8
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1243.0 1034 61.2
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1099 59.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1237.2 1096 59.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1235.7 1089 60.7
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1233.0 1095 58.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1228.4 1074 59.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1226.1 1033 60.0
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1223.8 1097 58.7
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1217.2 1035 59.5
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1214.1 1063 58.8
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1209.5 1077 57.9
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1194.1 1018 59.5
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1188.3 1343 49.3
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1186.8 1106 57.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1182.9 1099 57.7
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1179.1 1062 58.1
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1178.3 1034 57.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1159.1 887 66.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1157.5 1042 57.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1156.4 1081 56.6
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1152.1 1080 57.1
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1139.0 1031 56.7
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1121.7 874 64.4
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1116.7 1104 53.8
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1094.3 1055 54.4
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.0e-303 1047.0 1090 53.3
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 5.6e-302 1041.2 1095 53.2
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 3.5e-296 1021.9 869 60.9
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 9.7e-294 1013.8 785 65.5
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.8e-287 993.0 956 53.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.3e-285 986.9 677 72.2
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 4.2e-281 971.8 1088 50.3
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.0e-274 950.7 1073 47.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 7.7e-267 924.5 803 60.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 3.7e-261 905.6 1048 46.2
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 2.0e-259 899.8 966 49.0
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 9.8e-246 854.4 1049 45.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 6.8e-215 751.9 661 58.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-208 730.3 532 69.0
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-208 730.3 532 69.0
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.5e-198 697.6 1033 39.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.8e-192 676.8 573 60.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.2e-140 503.8 375 68.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 3.0e-93 347.8 398 49.0
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.2e-64 251.9 1046 23.4
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 3.3e-60 238.0 202 59.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.8e-50 205.7 137 70.1
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.3e-45 188.7 164 60.4
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 5.3e-42 177.6 172 57.6
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.5e-41 174.9 206 44.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 2.1e-38 165.6 620 24.2
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 6.1e-38 164.1 388 30.4
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.7e-35 154.8 177 49.2
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.1e-30 139.0 166 47.0
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 6.8e-29 134.0 154 48.1
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 3.5e-25 121.7 141 48.2
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-24 118.2 121 54.5
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 8.8e-21 107.1 298 28.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-19 103.2 89 56.2
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.7e-17 95.5 99 47.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.0e-13 83.6 74 60.8
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 6.4e-11 74.3 68 55.9
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.2e-10 72.0 302 25.8
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 3.3e-07 62.0 50 48.0
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.6e-06 58.5 127 34.6
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.0e-06 57.4 78 46.2


User provided reference genes

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