Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 5.2e-254 880.6 440 100.0
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 5.4e-235 817.4 445 93.3
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.6e-231 805.8 438 93.2
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.6e-231 805.8 438 93.2
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-229 799.7 438 92.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.2e-229 799.7 438 92.7
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 7.8e-226 786.9 441 90.2
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 1.0e-225 786.6 439 90.4
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 3.3e-224 781.6 439 90.0
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 7.3e-224 780.4 440 89.5
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 1.5e-221 772.7 440 89.3
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 2.8e-199 698.7 442 81.0
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.3e-196 689.9 439 81.3
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 5.6e-192 674.5 387 87.3
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 4.0e-174 615.1 449 69.7
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.0e-173 612.8 448 69.6
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 2.9e-172 609.0 439 71.8
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 4.9e-172 608.2 446 69.7
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 8.4e-172 607.4 442 69.2
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-171 607.1 448 69.0
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.9e-171 606.3 471 67.3
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 5.5e-171 604.7 445 69.4
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 6.7e-169 597.8 451 68.7
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.5e-168 596.7 449 68.8
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 9.6e-168 594.0 456 67.5
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.6e-167 593.2 450 67.6
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 2.1e-167 592.8 445 68.8
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 2.8e-167 592.4 449 68.4
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.8e-167 592.4 433 69.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 3.7e-167 592.0 445 68.5
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.1e-166 590.5 453 67.1
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.4e-166 589.3 446 68.8
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 3.1e-166 589.0 433 69.5
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 4.0e-166 588.6 436 68.8
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 6.9e-166 587.8 454 66.5
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.2e-165 587.0 433 68.6
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.5e-165 586.6 443 68.2
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 2.0e-165 586.3 449 67.3
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 2.0e-165 586.3 441 68.3
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 4.5e-165 585.1 442 67.4
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.0e-164 583.9 446 67.3
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.7e-164 583.2 441 68.0
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 2.2e-164 582.8 448 67.2
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 2.2e-164 582.8 447 67.3
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 2.9e-164 582.4 435 67.6
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 3.8e-164 582.0 449 66.6
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 1.1e-163 580.5 443 67.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.9e-163 579.7 445 67.0
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 3.2e-163 578.9 442 67.2
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.2e-163 578.6 436 67.7
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 4.2e-163 578.6 451 65.9
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.5e-163 578.2 451 67.6
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 5.5e-163 578.2 448 67.2
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.6e-162 576.6 438 66.4
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 4.6e-162 575.1 444 67.6
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 6.0e-162 574.7 430 67.7
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.8e-161 573.2 450 67.1
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 3.9e-161 572.0 438 65.8
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 6.7e-161 571.2 443 65.7
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.7e-161 571.2 449 65.7
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 8.7e-161 570.9 434 66.6
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 8.7e-161 570.9 447 66.0
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.9e-160 569.7 455 65.1
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 5.7e-160 568.2 445 67.2
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 7.4e-160 567.8 445 64.9
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 7.4e-160 567.8 447 66.9
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 8.2e-159 564.3 445 67.4
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.8e-158 563.1 442 64.7
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 3.1e-158 562.4 437 65.4
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 3.1e-158 562.4 443 65.5
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-157 560.1 442 65.6
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.0e-156 557.4 444 65.8
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.0e-156 557.4 447 65.1
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 5.0e-156 555.1 459 63.4
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.5e-155 552.7 445 62.0
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 2.5e-155 552.7 444 63.7
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 9.4e-155 550.8 443 63.0
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.4e-153 547.0 440 63.4
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.0e-153 545.8 438 64.4
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 6.7e-153 544.7 443 62.5
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.5e-152 543.5 447 61.3
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 5.7e-152 541.6 434 61.3
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 7.4e-152 541.2 444 62.8
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 1.5e-149 533.5 451 61.0
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 5.0e-148 528.5 429 62.7
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 6.5e-148 528.1 447 62.2
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 7.2e-147 524.6 452 61.9
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 1.2e-146 523.9 434 60.4
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.8e-145 520.0 437 62.9
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.5e-144 516.9 451 60.5
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 1.3e-143 513.8 493 59.2
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.3e-140 503.8 453 59.4
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.4e-137 493.8 370 67.8
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 1.2e-133 480.7 437 59.5
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 2.2e-132 476.5 459 57.7
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.1e-131 474.2 437 58.4
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.4e-129 467.2 352 69.3
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 1.2e-128 464.2 346 68.2
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.1e-126 457.6 434 53.7
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 1.2e-125 454.1 358 64.2
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 2.0e-125 453.4 450 56.0
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.5e-125 452.2 355 66.2
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 5.7e-120 435.3 444 49.1
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 3.7e-119 432.6 446 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 4.8e-119 432.2 436 50.9
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 4.1e-118 429.1 446 49.6
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 2.7e-117 426.4 360 64.4
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 1.5e-115 420.6 329 65.0
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 8.0e-114 414.8 444 48.2
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.9e-107 393.7 611 40.1
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 4.0e-105 386.0 290 67.9
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 3.9e-84 316.2 450 42.7
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.8e-81 307.4 317 50.2
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 2.4e-81 307.0 243 65.8
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.7e-79 300.8 208 73.1
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.6e-66 257.7 334 46.7
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 2.0e-64 250.8 221 57.9
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.5e-43 180.6 154 59.7
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 4.3e-43 179.9 399 32.6
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-32 144.1 199 45.7
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 5.0e-31 139.8 119 55.5
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.2e-23 114.4 108 56.5
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 3.6e-21 107.1 113 44.2
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 2.0e-19 101.3 98 49.0
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.7e-18 97.1 91 59.3
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.0e-15 89.0 58 70.7
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 2.6e-11 74.3 64 53.1
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 6.3e-10 69.7 123 34.1
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 1.9e-06 58.2 34 79.4
Haze_21185 Corylus avellana HOM05D000405 ORTHO05D000712 7.2e-06 56.2 25 92.0
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 9.4e-06 55.8 40 62.5


User provided reference genes

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