Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.0e-28 129.8 62 100.0
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 4.0e-25 117.9 62 93.5
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 4.0e-25 117.9 62 93.5
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 4.0e-25 117.9 62 93.5
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 4.0e-25 117.9 62 93.5
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.0e-23 113.2 63 92.1
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 5.5e-22 107.5 62 75.8
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 7.1e-22 107.1 62 87.1
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.2e-21 106.3 62 87.1
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.6e-21 105.9 62 80.6
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.5e-21 104.8 62 75.8
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.1e-21 104.0 63 79.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.0e-20 103.2 63 81.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.3e-20 102.1 63 74.6
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 8.7e-20 100.1 64 81.2
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 8.7e-20 100.1 64 81.2
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 8.7e-20 100.1 64 81.2
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.1e-19 99.8 63 74.6
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.5e-19 99.4 62 82.3
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.5e-19 99.4 62 82.3
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 7.4e-19 97.1 47 91.5
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 7.4e-19 97.1 62 72.6
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.3e-18 96.3 63 79.4
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.8e-17 92.4 62 71.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.2e-16 89.7 63 61.9
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.5e-16 89.4 66 60.6
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.5e-16 89.4 56 75.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.6e-16 88.6 62 67.7
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.5e-16 87.8 62 64.5
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 7.7e-16 87.0 65 72.3
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.3e-15 86.3 62 59.7
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.3e-15 86.3 54 64.8
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 2.2e-15 85.5 62 59.7
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.9e-15 85.1 48 72.9
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 2.9e-15 85.1 64 59.4
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.8e-15 84.7 54 63.0
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 6.5e-15 84.0 62 64.5
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.4e-14 82.8 62 61.3
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.4e-14 82.8 62 51.6
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.5e-14 82.0 53 64.2
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 4.2e-14 81.3 45 73.3
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 4.2e-14 81.3 62 59.7
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 7.2e-14 80.5 64 56.2
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 9.4e-14 80.1 56 64.3
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 9.4e-14 80.1 56 64.3
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.2e-13 79.7 62 58.1
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.2e-13 79.7 62 58.1
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.2e-13 79.7 51 68.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.6e-13 79.3 63 55.6
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.6e-13 79.3 62 59.7
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 2.1e-13 79.0 56 69.6
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.1e-13 79.0 61 57.4
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.1e-13 79.0 61 57.4
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.7e-13 78.6 68 52.9
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.6e-13 78.2 62 61.3
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.6e-13 78.2 60 56.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.6e-13 77.8 53 66.0
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 4.6e-13 77.8 47 70.2
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.6e-13 77.8 44 70.5
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 6.1e-13 77.4 56 60.7
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 6.1e-13 77.4 62 56.5
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 7.9e-13 77.0 44 72.7
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.0e-12 76.6 58 60.3
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.0e-12 76.6 52 59.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.0e-12 76.6 53 58.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.4e-12 76.3 62 56.5
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.8e-12 75.9 67 55.2
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.3e-12 75.5 44 75.0
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 3.0e-12 75.1 65 55.4
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 3.0e-12 75.1 44 68.2
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 3.0e-12 75.1 62 53.2
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 3.9e-12 74.7 55 56.4
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.9e-12 74.7 55 56.4
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 5.1e-12 74.3 46 67.4
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 5.1e-12 74.3 62 51.6
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 5.1e-12 74.3 44 65.9
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 5.1e-12 74.3 58 58.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 6.7e-12 73.9 56 60.7
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 8.8e-12 73.6 54 57.4
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.1e-11 73.2 44 65.9
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-11 73.2 56 75.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.1e-11 73.2 52 57.7
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.1e-11 73.2 46 63.0
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.1e-11 73.2 46 63.0
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.0e-11 72.4 62 50.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 2.0e-11 72.4 62 54.8
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.5e-11 72.0 58 60.3
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.5e-11 72.0 59 59.3
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.5e-11 72.0 56 51.8
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 3.3e-11 71.6 58 50.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.3e-11 71.6 52 55.8
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.3e-11 71.6 63 52.4
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 4.3e-11 71.2 52 69.2
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 4.3e-11 71.2 43 72.1
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 5.7e-11 70.9 51 54.9
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.4e-11 70.5 64 53.1
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 9.7e-11 70.1 64 53.1
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.3e-10 69.7 64 53.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.3e-10 69.7 61 50.8
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 2.2e-10 68.9 62 51.6
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 2.8e-10 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 2.8e-10 68.6 47 55.3
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.8e-10 68.6 47 55.3
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.8e-10 68.6 67 50.7
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.8e-10 68.6 56 62.5
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.8e-10 68.6 63 52.4
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 3.7e-10 68.2 55 50.9
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.7e-10 68.2 53 49.1
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.8e-10 67.8 62 51.6
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 8.2e-10 67.0 67 52.2
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 8.2e-10 67.0 37 67.6
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.4e-09 66.2 58 56.9
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.8e-09 65.9 48 66.7
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.1e-09 65.1 54 50.0
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 5.3e-09 64.3 50 50.0
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-08 63.2 42 81.0
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.2e-08 63.2 52 48.1
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.2e-08 63.2 62 46.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 1.2e-08 63.2 39 66.7
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-08 62.8 60 46.7
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 2.0e-08 62.4 58 44.8
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.5e-08 61.2 53 56.6
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.7e-07 59.3 57 47.4
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-06 56.6 58 41.4
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.1e-06 56.6 55 54.5
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 1.9e-06 55.8 47 72.3
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.9e-06 55.8 57 45.6
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 3.2e-06 55.1 48 45.8


User provided reference genes

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