Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-118 429.9 225 100.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.6e-110 402.9 225 95.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 8.0e-110 400.6 225 95.1
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.4e-108 395.2 227 93.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.4e-108 395.2 227 93.8
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 6.3e-107 391.0 220 95.5
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-98 363.2 226 89.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 6.6e-96 354.4 226 88.5
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.5e-95 352.4 225 88.4
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.3e-95 352.1 226 88.5
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.3e-95 352.1 226 88.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 3.6e-94 348.6 226 88.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 8.0e-94 347.4 225 86.2
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.7e-89 332.4 217 86.2
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 7.8e-89 330.9 226 85.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 7.8e-89 330.9 225 83.1
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 1.5e-87 326.6 225 83.6
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.1e-82 310.5 228 78.1
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 9.5e-79 297.4 220 74.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.7e-72 276.6 183 84.2
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 7.3e-63 244.6 211 65.9
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 8.1e-62 241.1 215 65.6
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.4e-61 239.6 221 63.8
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.1e-61 239.2 223 62.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.9e-61 238.0 215 62.8
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.9e-61 238.0 201 67.2
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.5e-60 236.9 211 64.5
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.4e-60 235.7 232 59.9
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 7.6e-60 234.6 218 62.8
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 9.9e-60 234.2 207 64.3
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.7e-59 233.4 219 61.2
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.2e-59 233.0 217 63.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 2.9e-59 232.6 215 64.7
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 2.9e-59 232.6 231 61.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 3.8e-59 232.3 214 61.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 4.9e-59 231.9 227 60.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.9e-58 229.9 222 60.8
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.4e-58 229.6 223 59.2
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 2.4e-58 229.6 215 61.9
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.4e-58 228.4 216 62.0
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 9.3e-58 227.6 213 62.9
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 9.3e-58 227.6 220 61.8
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 9.3e-58 227.6 222 60.8
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.2e-57 227.3 200 66.0
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 1.2e-57 227.3 199 64.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.7e-57 226.1 215 61.9
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 3.5e-57 225.7 218 60.6
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.6e-57 225.3 206 60.7
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 4.6e-57 225.3 202 65.3
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 4.6e-57 225.3 217 62.2
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 7.9e-57 224.6 229 58.5
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.0e-56 224.2 230 56.5
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.0e-56 224.2 214 63.6
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.3e-56 223.8 216 58.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.3e-56 223.8 224 58.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 3.0e-56 222.6 214 63.6
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 3.0e-56 222.6 207 63.3
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 3.9e-56 222.2 224 59.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.9e-56 222.2 213 59.2
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.9e-56 222.2 215 60.5
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 3.9e-56 222.2 206 61.2
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 5.1e-56 221.9 211 62.6
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.6e-56 221.5 214 62.1
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 6.6e-56 221.5 199 63.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.6e-56 221.5 241 54.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 8.7e-56 221.1 215 60.9
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.1e-55 220.7 210 63.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.1e-55 220.7 216 60.2
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.9e-55 219.9 184 67.4
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 4.3e-55 218.8 228 59.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.4e-55 218.0 212 60.4
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 7.4e-55 218.0 210 61.9
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 9.6e-55 217.6 224 57.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 9.6e-55 217.6 203 64.0
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-54 217.2 212 59.4
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.6e-54 216.9 224 59.4
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.6e-54 216.9 185 64.9
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.1e-54 216.5 208 59.1
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.8e-54 216.1 208 61.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.8e-54 216.1 195 65.1
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 3.6e-54 215.7 224 56.7
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 4.8e-54 215.3 195 62.6
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 6.2e-54 214.9 143 78.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.1e-53 214.2 209 57.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.8e-53 213.4 200 61.0
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.8e-53 213.4 208 57.2
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 3.1e-53 212.6 201 60.7
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 6.9e-53 211.5 183 65.0
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 9.0e-53 211.1 220 58.6
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 9.0e-53 211.1 200 61.5
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.6e-52 209.5 202 59.9
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.4e-52 209.1 156 77.6
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 5.8e-52 208.4 166 69.9
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.8e-52 208.4 197 57.9
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 7.6e-52 208.0 154 71.4
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 7.6e-52 208.0 216 57.9
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 9.9e-52 207.6 168 69.6
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.3e-51 207.2 208 58.7
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.8e-51 205.7 198 58.1
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.9e-51 205.3 177 67.2
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.9e-51 205.3 210 56.7
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 8.4e-51 204.5 208 60.1
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.1e-50 204.1 176 64.8
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.9e-50 203.4 174 66.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.9e-50 203.4 216 57.9
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.4e-50 203.0 215 57.7
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.2e-50 202.6 201 59.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 9.3e-50 201.1 186 63.4
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 5.1e-48 195.3 139 76.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.1e-47 194.1 193 62.7
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 4.3e-47 192.2 131 71.8
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 7.4e-47 191.4 206 61.7
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 9.6e-47 191.0 146 69.9
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.6e-46 190.3 169 62.1
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.8e-46 189.5 205 54.6
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.8e-46 189.5 198 59.1
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.7e-46 189.1 205 54.6
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 4.8e-46 188.7 199 57.3
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 5.3e-45 185.3 208 54.3
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 3.8e-43 179.1 142 66.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 3.8e-43 179.1 126 73.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.2e-41 174.1 137 66.4
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 3.0e-40 169.5 131 67.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.7e-40 167.9 138 65.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 2.5e-39 166.4 133 63.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.6e-39 164.5 138 64.5
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.4e-37 160.6 220 48.6
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 6.1e-33 145.2 126 61.1
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 7.4e-31 138.3 80 90.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 7.4e-31 138.3 80 90.0
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.4e-28 129.4 216 43.1
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 5.0e-27 125.6 158 49.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 7.9e-25 118.2 218 41.7
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.4e-24 117.5 126 57.9
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.0e-19 101.3 76 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 7.4e-15 85.1 72 63.9
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.3e-14 82.0 70 62.9
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 8.5e-11 71.6 140 39.3
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.5e-10 68.9 45 77.8
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 4.7e-09 65.9 48 77.1


User provided reference genes

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