Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 7.0e-93 344.0 178 100.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 5.4e-69 264.6 180 81.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.3e-67 260.0 178 82.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 3.9e-67 258.5 181 78.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 5.1e-67 258.1 178 81.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 1.1e-66 256.9 178 81.5
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 1.1e-66 256.9 178 81.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.6e-65 253.1 177 80.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.6e-65 251.9 177 79.7
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.6e-65 251.9 177 80.2
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 2.4e-64 249.2 177 79.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 7.6e-63 244.2 178 77.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 4.9e-62 241.5 178 77.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 1.5e-58 229.9 178 74.2
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 8.7e-51 204.1 175 65.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.2e-44 183.7 173 59.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.2e-44 183.7 173 59.5
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.6e-44 183.3 174 57.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 4.6e-44 181.8 170 57.1
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 6.0e-44 181.4 170 57.6
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 7.9e-44 181.0 173 59.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.0e-43 180.6 173 59.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.3e-43 179.5 171 59.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.9e-43 178.7 173 58.4
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 5.1e-43 178.3 174 55.7
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.1e-42 177.2 175 56.0
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.1e-42 177.2 171 58.5
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.5e-42 176.8 174 55.7
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-42 176.4 166 59.6
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.9e-42 176.4 174 57.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.5e-42 176.0 149 63.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.5e-42 176.0 174 55.2
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 5.6e-42 174.9 168 56.5
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.4e-42 174.5 172 56.4
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 9.6e-42 174.1 162 60.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.3e-41 173.7 168 58.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.6e-41 173.3 171 56.1
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.6e-41 173.3 173 56.1
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 3.7e-41 172.2 173 56.1
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.1e-40 170.6 174 53.4
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.1e-40 170.6 164 56.1
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 1.4e-40 170.2 176 55.1
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 2.4e-40 169.5 170 55.3
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 5.3e-40 168.3 178 52.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 6.9e-40 167.9 168 56.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 9.0e-40 167.5 169 55.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 9.0e-40 167.5 171 57.3
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 1.2e-39 167.2 173 53.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.5e-39 166.8 167 56.9
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 5.8e-39 164.9 175 53.1
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 1.0e-38 164.1 168 55.4
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 2.2e-38 162.9 166 54.2
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.2e-38 162.9 168 54.8
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.4e-38 161.0 158 57.6
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 8.4e-38 161.0 164 54.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 1.1e-37 160.6 172 51.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.1e-37 160.6 164 54.9
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.1e-37 160.6 164 54.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 1.9e-37 159.8 164 54.9
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 4.2e-37 158.7 174 51.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 5.5e-37 158.3 167 52.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 7.1e-37 157.9 178 52.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 7.1e-37 157.9 171 53.8
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 1.2e-36 157.1 161 54.7
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.6e-36 156.8 164 50.6
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.1e-36 156.4 161 54.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.1e-36 156.4 174 50.6
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.7e-36 156.0 168 50.6
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 3.5e-36 155.6 168 53.6
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.0e-35 154.1 176 50.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.8e-35 153.3 164 51.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.8e-35 153.3 164 51.2
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 2.3e-35 152.9 175 48.6
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 3.0e-35 152.5 164 51.8
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 8.7e-35 151.0 164 50.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.9e-34 149.8 168 50.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.3e-33 147.1 162 54.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 2.2e-33 146.4 170 50.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 4.8e-33 145.2 168 47.6
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 6.3e-33 144.8 163 50.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.2e-33 144.4 175 48.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.8e-32 143.3 163 49.1
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.4e-32 142.9 168 49.4
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 9.0e-32 141.0 162 50.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.6e-31 139.4 162 53.7
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 2.6e-31 139.4 143 51.7
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 3.4e-31 139.0 162 49.4
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.4e-31 139.0 158 51.3
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.9e-30 136.0 173 49.1
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.1e-29 134.0 158 50.0
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.6e-28 130.2 154 51.9
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 6.7e-27 124.8 127 60.6
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 7.4e-26 121.3 100 63.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 3.1e-24 115.9 169 42.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 2.6e-23 112.8 170 39.4
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.9e-21 106.7 144 43.8
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.5e-21 106.3 101 54.5
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.5e-21 106.3 90 62.2
BcaC08g47482 Brassica carinata HOM05D000008 ORTHO05D000005 8.8e-11 71.2 35 97.1
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.0e-08 61.6 80 45.0


User provided reference genes

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