Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1497.6 823 100.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1348.6 844 90.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1348.6 844 90.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 0.0e+00 1327.4 840 89.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1327.0 846 89.2
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 0.0e+00 1327.0 846 89.2
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 0.0e+00 1213.7 833 80.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 0.0e+00 1211.4 832 81.5
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 0.0e+00 1192.9 834 79.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 0.0e+00 1182.5 803 81.2
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1136.7 680 92.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 0.0e+00 1090.1 840 73.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.6e-304 1047.7 679 85.3
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.0e-288 994.2 616 88.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 9.0e-276 953.7 846 66.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.9e-254 882.9 842 59.9
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.3e-250 870.2 841 61.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.1e-249 867.1 851 60.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 7.2e-249 864.4 844 58.5
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 2.1e-248 862.8 841 59.2
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.1e-248 862.8 841 59.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.7e-248 862.4 844 58.3
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 9.7e-246 854.0 842 60.0
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 9.7e-246 854.0 839 58.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.3e-245 853.6 839 57.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.8e-245 852.4 839 58.3
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.4e-244 850.1 848 58.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.1e-244 849.0 839 58.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 5.9e-243 844.7 843 57.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.8e-242 842.0 842 57.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.5e-242 841.3 831 58.7
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 7.9e-240 834.3 847 58.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 7.9e-240 834.3 837 57.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 7.9e-240 834.3 845 58.2
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.0e-239 833.9 844 58.3
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.3e-239 832.8 841 56.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 2.3e-239 832.8 844 56.9
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 3.9e-239 832.0 838 58.0
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.5e-238 830.1 815 56.2
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 5.7e-238 828.2 847 57.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.3e-237 827.0 837 56.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.8e-237 825.9 847 57.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 9.1e-236 820.8 837 58.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-235 820.5 818 56.4
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.7e-235 817.8 845 55.4
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-234 817.4 840 55.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-234 817.0 845 55.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 9.4e-233 810.8 840 55.6
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.1e-232 809.7 840 57.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.0e-231 807.4 840 55.7
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.0e-231 805.8 829 55.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 5.1e-231 805.1 849 55.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.5e-230 803.5 838 56.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.0e-230 803.1 838 55.5
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.3e-230 802.4 841 55.2
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.7e-230 801.6 829 56.6
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.4e-230 801.2 837 55.4
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 4.8e-229 798.5 835 55.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.4e-228 796.2 844 57.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 5.3e-228 795.0 842 54.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.0e-228 794.7 844 57.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.1e-228 794.3 841 55.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.7e-226 790.0 835 55.1
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.9e-226 789.3 815 55.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-225 787.3 840 52.5
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 6.1e-224 781.6 860 56.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.3e-223 779.6 823 56.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 6.7e-223 778.1 838 54.2
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-221 772.7 841 53.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.1e-220 770.8 841 54.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.4e-220 770.4 834 54.9
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.9e-219 765.0 843 51.8
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.3e-218 763.8 831 53.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-218 763.5 848 56.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.2e-216 757.3 840 53.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.2e-215 751.9 831 53.3
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.4e-214 749.2 841 51.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.4e-214 748.8 837 53.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 4.4e-214 748.8 863 51.9
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.8e-213 746.1 835 52.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 3.7e-213 745.7 844 53.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 9.1e-212 741.1 848 54.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.7e-211 739.6 872 52.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.2e-207 725.3 835 53.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 6.8e-207 724.9 872 52.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.5e-201 706.4 773 53.8
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.6e-201 705.3 831 51.3
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 4.0e-199 699.1 884 50.3
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.2e-199 698.7 842 48.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 8.9e-199 698.0 837 49.0
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.1e-192 676.8 825 49.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.8e-192 676.4 859 49.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.0e-192 674.9 932 45.8
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.0e-190 670.2 833 49.7
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.3e-186 657.5 819 47.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.2e-184 651.0 856 47.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.6e-184 649.4 798 48.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 6.0e-179 632.1 846 49.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.5e-177 627.5 850 47.3
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.2e-164 582.8 840 43.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.6e-160 569.7 532 57.3
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 6.2e-144 515.8 605 50.6
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.3e-137 493.0 605 50.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 8.5e-133 478.8 867 37.6
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 6.7e-130 469.2 862 39.6
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.3e-128 464.9 837 37.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 4.5e-126 456.4 843 38.8
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.5e-124 450.7 449 54.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.5e-116 424.1 383 63.4
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-111 407.9 385 59.7
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-102 378.6 437 51.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-100 371.3 403 54.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 9.4e-100 369.0 635 35.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.5e-92 344.4 307 58.0
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.7e-91 340.1 450 50.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.7e-85 321.6 447 44.1
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-80 305.4 294 55.8
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.6e-76 290.0 330 49.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-72 278.9 200 69.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.2e-72 278.1 329 52.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.8e-67 261.2 281 57.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 8.1e-67 259.6 241 60.2
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-66 258.5 243 60.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.4e-57 227.6 229 49.3
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.9e-56 224.6 195 62.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.7e-53 215.3 275 54.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 3.9e-53 214.2 828 29.3
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.6e-51 207.6 273 52.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 8.1e-51 206.5 277 52.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-50 206.1 409 41.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.2e-50 203.8 150 65.3
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.1e-44 186.0 170 70.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.4e-42 179.1 214 50.9
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.9e-38 163.3 197 62.9
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-37 162.5 169 55.6
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.3e-37 162.5 172 56.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.3e-37 161.8 200 62.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.3e-36 157.5 206 46.6
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 5.8e-33 147.1 118 70.3
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 7.1e-31 140.2 593 25.0
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-28 132.5 144 47.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.8e-25 120.6 71 73.2
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.0e-24 119.8 595 25.4
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.3e-24 119.4 518 24.3
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-22 112.8 154 46.8
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.3e-20 104.8 115 48.7
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.3e-20 104.8 170 35.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.4e-17 94.7 106 50.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 4.5e-17 94.4 104 50.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.7e-14 85.1 76 60.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.2e-11 75.5 61 57.4
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-09 69.3 55 54.5
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-08 64.3 50 56.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.2e-07 61.6 152 28.3
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.2e-07 61.6 65 46.2


User provided reference genes

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