Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 1.7e-101 372.9 209 100.0
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 2.2e-93 345.9 209 91.9
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-92 343.6 209 95.7
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.4e-92 342.4 209 95.2
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 9.1e-92 340.5 209 94.7
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 9.1e-92 340.5 209 94.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.7e-77 293.1 210 79.5
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 3.1e-76 288.9 211 78.7
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 5.4e-76 288.1 211 82.0
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.0e-70 269.6 204 76.0
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 2.1e-64 249.6 233 66.1
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 2.8e-56 222.6 209 67.9
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 7.1e-44 181.4 203 55.2
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 2.1e-43 179.9 216 53.2
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 5.1e-42 175.3 212 52.8
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 8.7e-42 174.5 207 52.7
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 4.8e-40 168.7 208 52.9
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 1.3e-37 160.6 224 49.6
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 6.4e-37 158.3 189 50.8
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 3.2e-36 156.0 212 48.1
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.7e-34 150.2 190 51.6
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.3e-23 112.1 210 40.5
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.5e-22 110.5 210 41.0
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 5.8e-22 108.6 206 39.3
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.7e-21 107.1 217 39.6
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.6e-19 100.5 210 37.6
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.5e-19 99.4 65 76.9
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 1.3e-18 97.4 210 38.1
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 5.1e-18 95.5 208 36.1
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 1.1e-17 94.4 205 37.1
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.3e-16 90.9 204 37.3
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 1.6e-16 90.5 194 37.6
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.8e-16 89.7 204 37.3
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 3.7e-16 89.4 216 34.7
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 3.7e-16 89.4 206 36.9
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.8e-16 89.0 206 35.4
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 8.2e-16 88.2 207 36.7
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.5e-14 84.0 205 35.1
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.6e-14 83.2 212 32.1
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.4e-14 82.8 217 35.9
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 4.5e-14 82.4 203 36.0
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 5.8e-14 82.0 210 32.4
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.0e-13 81.3 213 32.9
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 1.7e-13 80.5 201 35.3
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.4e-12 77.4 212 33.5
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 1.9e-12 77.0 210 31.4
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 2.5e-12 76.6 209 29.7
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 2.5e-12 76.6 215 33.5
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 3.2e-12 76.3 234 32.1
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 5.5e-12 75.5 210 33.3
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 7.1e-12 75.1 212 32.1
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 7.1e-12 75.1 53 71.7
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 1.2e-11 74.3 212 30.7
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.6e-11 73.9 203 34.0
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.6e-11 73.9 82 56.1
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.6e-11 73.9 214 30.4
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.1e-11 73.6 215 33.0
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 2.1e-11 73.6 215 33.0
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 2.1e-11 73.6 210 32.4
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 6.1e-11 72.0 214 29.4
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 1.8e-10 70.5 215 29.8
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.3e-10 70.1 221 32.1
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 2.3e-10 70.1 206 34.0
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 6.7e-10 68.6 64 54.7
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 8.7e-10 68.2 211 32.2
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.9e-09 67.0 173 32.9
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 1.9e-09 67.0 207 30.9
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 5.7e-09 65.5 205 27.8
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 5.7e-09 65.5 233 29.2
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.3e-08 64.3 54 57.4
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.8e-08 63.2 233 27.9
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 4.8e-08 62.4 211 29.4
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 6.3e-08 62.0 211 29.4
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 8.2e-08 61.6 223 29.1
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 8.2e-08 61.6 215 31.2
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.1e-07 59.7 210 30.5
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 4.1e-07 59.3 223 28.7
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 9.0e-07 58.2 219 26.0
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 4.5e-06 55.8 66 47.0
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.0e-05 54.7 204 31.4


User provided reference genes

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