Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.9e-95 352.4 174 100.0
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 3.7e-46 188.7 105 89.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 3.7e-46 188.7 105 89.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 1.1e-45 187.2 105 88.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 5.0e-43 178.3 110 81.8
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-40 170.6 110 79.1
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.0e-40 170.6 110 79.1
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 5.2e-40 168.3 110 78.2
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 5.7e-39 164.9 110 77.3
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 5.7e-39 164.9 110 77.3
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 7.5e-39 164.5 110 77.3
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.2e-38 162.9 110 77.3
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 2.8e-38 162.5 93 87.1
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 1.0e-32 144.1 112 68.8
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.3e-32 142.9 110 69.1
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 5.2e-32 141.7 105 72.4
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.3e-27 126.3 118 62.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.1e-21 107.5 117 50.4
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 5.4e-13 78.6 114 43.0
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 5.4e-13 78.6 114 43.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 6.0e-12 75.1 100 44.0
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-11 73.9 116 38.8
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.3e-11 73.9 116 38.8
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 8.6e-11 71.2 89 46.1
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.5e-10 70.5 57 57.9
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.9e-10 70.1 111 39.6
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.9e-10 70.1 58 60.3
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 3.3e-10 69.3 109 40.4
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 4.3e-10 68.9 117 41.9
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 7.3e-10 68.2 84 44.0
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 9.5e-10 67.8 118 39.0
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 9.5e-10 67.8 101 41.6
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.2e-09 67.4 121 40.5
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.6e-09 67.0 111 45.9
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 2.1e-09 66.6 112 39.3
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.1e-09 66.6 61 54.1
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.8e-09 66.2 82 43.9
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 2.8e-09 66.2 90 40.0
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 2.8e-09 66.2 67 49.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.2e-09 65.1 111 37.8
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.1e-08 64.3 113 41.6
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.4e-08 63.9 111 36.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.8e-08 63.5 92 42.4
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.3e-08 63.2 112 37.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.3e-08 63.2 50 60.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 2.3e-08 63.2 96 41.7
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 2.3e-08 63.2 94 42.6
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 3.1e-08 62.8 39 74.4
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 3.1e-08 62.8 90 42.2
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 3.1e-08 62.8 43 67.4
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 4.0e-08 62.4 69 47.8
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.0e-08 62.4 90 40.0
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 4.0e-08 62.4 59 54.2
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 5.2e-08 62.0 69 47.8
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 5.2e-08 62.0 57 54.4
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 8.9e-08 61.2 60 46.7
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.2e-07 60.8 91 44.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 1.2e-07 60.8 112 38.4
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.5e-07 60.5 112 35.7
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.5e-07 60.5 42 66.7
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 3.4e-07 59.3 52 65.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 3.4e-07 59.3 81 40.7
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 4.4e-07 58.9 88 43.2
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.4e-07 58.9 111 37.8
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 7.5e-07 58.2 40 62.5
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 7.5e-07 58.2 40 62.5
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 7.5e-07 58.2 40 62.5
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 7.5e-07 58.2 111 40.5
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 9.8e-07 57.8 48 54.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 9.8e-07 57.8 48 52.1
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 2.2e-06 56.6 42 57.1
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.9e-06 56.2 40 62.5
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.9e-06 56.2 55 49.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.9e-06 56.2 55 49.1
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 4.9e-06 55.5 47 68.1


User provided reference genes

Program Settings