Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-189 666.0 348 100.0
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.2e-150 535.4 358 86.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.9e-149 530.8 359 86.1
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-137 493.0 355 81.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 8.5e-135 484.2 367 78.7
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.7e-133 478.4 370 77.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-127 459.5 372 76.3
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.9e-126 456.4 372 76.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-126 456.4 372 76.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.6e-125 453.4 371 75.2
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.7e-125 452.6 371 74.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 4.4e-123 445.3 384 71.4
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 4.8e-122 441.8 373 74.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 7.7e-120 434.5 376 69.4
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.2e-115 420.6 374 67.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.7e-114 416.8 368 70.1
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 8.3e-114 414.5 375 67.7
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.5e-104 382.5 370 65.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 5.8e-99 365.2 273 75.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.4e-68 263.5 398 46.5
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 5.4e-65 252.3 400 44.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.0e-64 248.8 370 46.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.3e-63 246.9 347 47.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 5.6e-62 242.3 403 44.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.1e-60 238.0 412 43.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.0e-60 236.1 405 42.0
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.0e-60 236.1 405 42.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.5e-59 234.2 410 42.9
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.6e-59 231.9 412 40.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.9e-59 231.5 398 42.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.2e-58 230.3 407 42.8
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.5e-57 225.7 408 41.9
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.0e-55 219.9 400 42.5
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.9e-55 219.5 410 42.0
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 8.7e-55 218.4 411 40.1
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.6e-53 214.2 420 41.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.7e-53 213.0 402 39.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.1e-52 211.5 420 40.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.4e-52 211.1 414 37.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-52 211.1 439 38.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.4e-52 211.1 409 39.1
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.8e-52 210.7 421 39.0
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.4e-52 210.3 407 39.6
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 3.1e-52 209.9 416 39.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.9e-52 208.8 454 36.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-51 207.2 414 38.6
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.6e-51 206.8 407 39.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.6e-51 206.8 406 39.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.4e-51 206.5 409 38.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.4e-51 206.5 409 38.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.5e-51 206.1 414 38.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 7.6e-51 205.3 439 37.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.3e-50 204.5 409 38.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-50 204.1 440 35.9
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.2e-50 203.8 439 38.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.9e-50 203.4 396 37.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.9e-50 203.4 436 36.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 8.4e-50 201.8 417 38.4
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-49 201.4 425 37.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.5e-49 200.3 449 36.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.5e-49 200.3 336 43.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 4.2e-49 199.5 412 37.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.2e-48 198.0 406 38.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.6e-48 197.6 425 37.4
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-48 197.6 447 34.9
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.6e-48 196.1 411 38.4
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.9e-48 195.3 413 37.8
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-47 194.5 411 38.9
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.9e-47 193.0 403 38.2
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 6.7e-47 192.2 389 36.8
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.1e-46 191.4 416 39.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.1e-46 191.4 412 36.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.5e-46 191.0 426 36.9
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.5e-46 190.3 359 40.7
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.5e-46 190.3 424 36.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 4.3e-46 189.5 363 42.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.6e-46 188.3 372 38.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.8e-45 186.0 375 38.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 4.8e-45 186.0 414 36.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 4.8e-45 186.0 407 38.8
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.3e-45 185.7 402 36.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.3e-45 185.7 416 35.8
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 8.2e-45 185.3 407 36.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.8e-44 184.1 407 36.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.4e-44 183.7 374 38.8
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 4.1e-44 183.0 424 35.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 4.1e-44 183.0 419 37.7
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.3e-44 182.6 434 34.8
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 6.9e-44 182.2 403 35.7
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.9e-44 182.2 390 41.0
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.6e-43 180.3 372 39.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.9e-43 179.1 374 35.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.7e-42 177.6 383 36.6
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 5.0e-42 176.0 416 35.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.5e-42 175.6 377 35.5
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.5e-42 175.6 396 34.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 5.5e-41 172.6 427 35.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 7.2e-41 172.2 367 38.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.2e-40 171.4 412 37.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 6.7e-39 165.6 414 34.1
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.5e-38 164.5 369 36.3
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 5.7e-38 162.5 367 38.7
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 5.7e-38 162.5 451 32.4
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 7.4e-38 162.2 389 34.2
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.3e-37 161.4 417 32.1
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.3e-37 161.4 170 68.8
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 6.3e-37 159.1 449 31.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 8.2e-37 158.7 389 33.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.1e-36 156.8 446 32.5
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.1e-36 156.4 382 35.1
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.2e-35 154.8 420 31.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.2e-35 154.8 331 40.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.5e-34 149.1 272 41.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.6e-32 143.3 388 33.5
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 3.6e-32 143.3 279 39.8
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 8.8e-31 138.7 121 69.4
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.7e-30 136.0 290 36.6
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.3e-29 132.5 234 40.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.4e-28 131.3 429 31.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.5e-27 127.9 238 39.1
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-27 127.9 243 37.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.6e-27 127.1 194 42.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 7.7e-27 125.6 245 35.5
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.3e-26 124.8 240 37.9
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.7e-26 124.4 248 38.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.7e-26 124.4 237 38.8
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 6.5e-26 122.5 202 41.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 8.5e-26 122.1 250 38.0
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.1e-25 121.7 377 28.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.9e-25 120.9 236 35.6
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.9e-25 120.9 369 32.5
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 7.2e-25 119.0 435 27.8
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.2e-24 118.2 234 35.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 4.7e-24 116.3 275 37.8
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.1e-24 115.9 251 36.3
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 7.9e-24 115.5 214 39.7
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.4e-23 114.8 243 37.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.8e-23 114.4 235 35.3
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.0e-23 113.6 207 38.2
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.9e-23 113.2 220 35.9
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.9e-23 113.2 235 38.3
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.9e-23 113.2 213 37.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 5.2e-23 112.8 212 39.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.1e-22 111.7 192 43.2
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 7.4e-22 109.0 251 36.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.7e-21 107.8 236 36.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.7e-21 107.8 250 34.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.2e-21 107.5 251 36.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.8e-21 107.1 215 35.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 6.3e-21 105.9 429 27.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.1e-20 105.1 256 35.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.1e-20 103.2 250 34.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.1e-20 103.2 245 31.8
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-19 101.3 255 31.4
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.5e-17 94.7 278 31.7
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.2e-17 92.4 360 30.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.0e-15 86.7 94 47.9
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 5.2e-15 86.3 106 48.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.3e-13 81.6 234 31.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.3e-13 79.3 63 60.3
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-12 78.6 147 34.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-12 77.4 147 35.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.4e-12 77.4 147 35.4
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.5e-09 67.4 188 32.4
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.4e-09 65.5 55 52.7
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.3e-07 60.8 253 30.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.8e-07 59.3 179 33.5
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.6e-06 57.4 52 48.1


User provided reference genes

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