Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.3e-187 659.4 317 100.0
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.6e-183 645.2 314 98.4
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.7e-178 627.5 316 95.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 5.7e-178 627.5 314 95.2
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.6e-177 625.9 316 95.9
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 3.7e-177 624.8 316 95.6
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.1e-176 623.2 315 95.6
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 9.0e-176 620.2 314 93.9
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.0e-174 616.7 314 92.7
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 2.9e-174 615.1 314 92.7
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 9.4e-173 610.1 305 94.8
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 7.4e-170 600.5 305 92.8
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 5.9e-167 590.9 311 89.4
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.4e-160 569.7 312 86.2
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 4.1e-160 568.2 312 84.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.6e-159 566.2 308 87.7
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.0e-158 563.5 312 84.6
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 1.3e-158 563.1 311 84.9
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.3e-158 563.1 313 83.7
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.9e-158 562.0 308 85.7
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.1e-157 560.1 309 85.4
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.5e-157 559.7 309 84.8
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.5e-157 559.7 308 85.4
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 1.5e-157 559.7 312 84.9
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 1.9e-157 559.3 314 84.4
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 9.4e-157 557.0 309 85.1
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.2e-156 556.6 309 84.5
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.6e-156 556.2 309 84.5
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 3.6e-156 555.1 311 83.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 8.0e-156 553.9 314 83.4
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.4e-155 553.1 310 82.6
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.8e-155 552.7 315 82.9
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.3e-155 552.4 314 83.1
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 3.0e-155 552.0 312 83.3
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 5.2e-155 551.2 303 85.8
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 5.2e-155 551.2 308 84.7
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 6.7e-155 550.8 309 84.1
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 8.8e-155 550.4 311 82.6
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.0e-154 549.3 311 83.9
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 2.6e-154 548.9 311 83.0
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 2.6e-154 548.9 309 82.8
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 7.5e-154 547.4 309 83.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 7.5e-154 547.4 314 82.8
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.3e-153 546.6 314 80.9
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 1.7e-153 546.2 307 84.0
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.2e-153 545.8 315 80.3
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.2e-153 545.8 311 83.3
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.8e-153 545.4 311 81.4
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.8e-153 545.4 307 82.7
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 3.7e-153 545.0 311 83.0
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.7e-153 545.0 313 80.8
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.4e-152 543.1 314 80.9
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.4e-152 542.3 311 81.7
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 4.1e-152 541.6 305 83.3
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 4.1e-152 541.6 311 82.0
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 4.1e-152 541.6 312 81.4
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 7.0e-152 540.8 314 80.9
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 7.0e-152 540.8 299 85.3
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.6e-151 539.7 306 83.0
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 2.0e-151 539.3 305 83.0
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 2.7e-151 538.9 310 81.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 5.9e-151 537.7 307 81.4
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 7.7e-151 537.3 307 81.1
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.3e-150 536.6 309 80.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 1.3e-150 536.6 311 82.0
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-150 535.8 297 85.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 5.0e-150 534.6 308 82.1
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.2e-148 530.0 308 80.5
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 3.6e-148 528.5 372 69.9
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-147 525.4 305 81.0
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.7e-146 521.2 301 81.4
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 7.5e-146 520.8 306 79.1
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.8e-145 518.8 298 81.2
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 3.7e-145 518.5 302 79.1
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.8e-144 516.2 298 83.2
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.0e-143 512.7 322 76.7
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.0e-142 510.4 299 79.6
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-142 509.2 315 78.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.2e-140 503.4 293 80.2
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.6e-140 503.1 299 78.6
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.6e-138 495.7 312 76.9
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 3.1e-136 488.8 301 78.1
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 9.2e-136 487.3 313 71.6
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 2.9e-134 482.3 306 72.9
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.5e-133 479.9 314 74.2
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.5e-133 479.9 314 74.2
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 3.6e-132 475.3 277 80.9
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.0e-131 473.8 314 73.9
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.3e-131 472.6 290 75.9
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.0e-131 472.2 263 84.4
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 4.9e-129 464.9 265 82.3
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.1e-128 463.8 307 73.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.8e-128 463.0 307 69.7
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 9.2e-128 460.7 301 70.1
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 3.0e-126 455.7 275 78.9
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 1.5e-125 453.4 248 85.1
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.0e-122 443.0 305 70.5
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.1e-120 437.2 254 79.9
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.4e-115 420.2 287 66.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.6e-114 416.0 299 70.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 4.4e-114 415.2 269 74.7
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 7.1e-112 407.9 258 77.1
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 6.0e-111 404.8 236 81.8
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.1e-108 396.4 309 59.9
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 4.9e-105 385.2 218 82.6
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.2e-103 380.6 311 58.8
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.2e-97 359.8 209 81.8
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 6.4e-89 331.6 323 52.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 9.3e-88 327.8 302 52.6
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-75 287.7 204 65.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 9.0e-75 284.6 288 47.9
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.4e-74 282.7 179 74.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 4.5e-74 282.3 294 50.7
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 5.5e-72 275.4 156 82.1
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.8e-67 260.4 165 73.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 5.3e-67 258.8 146 82.2
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 6.1e-63 245.4 163 72.4
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.2e-58 231.1 184 62.5
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 2.1e-55 220.3 119 85.7
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.1e-55 218.8 144 72.9
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.0e-54 218.0 169 64.5
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.2e-52 210.3 129 75.2
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.4e-51 207.6 115 83.5
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 4.8e-44 182.6 107 78.5
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 7.0e-43 178.7 102 80.4
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.1e-40 171.4 124 67.7
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 1.5e-40 171.0 118 67.8
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.6e-39 167.5 158 59.5
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.5e-37 161.0 105 69.5
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.9e-33 146.7 317 34.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.8e-30 137.5 318 34.9
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.8e-30 135.2 102 63.7
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.2e-28 130.6 73 84.9
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.6e-23 113.2 115 53.9
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.4e-22 111.3 64 81.2
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 2.6e-21 107.1 301 29.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 4.4e-21 106.3 69 72.5
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.3e-20 104.8 69 72.5
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.7e-20 103.2 95 53.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.8e-15 87.0 42 92.9
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.8e-15 87.0 42 92.9
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 4.0e-14 83.2 42 88.1
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.6e-13 80.5 55 69.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.4e-11 73.9 291 25.1
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 3.2e-11 73.6 52 63.5
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.1e-11 73.2 165 27.9
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.0e-11 72.4 303 23.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.0e-10 70.9 303 23.4
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.0e-10 70.9 284 25.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.7e-10 70.5 256 27.3
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.0e-09 68.6 291 25.8
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.7e-09 67.8 291 24.1
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 1.7e-09 67.8 66 56.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.0e-09 67.0 242 26.9
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.5e-08 63.9 218 28.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.3e-08 63.5 217 26.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.3e-08 62.4 289 23.9
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.5e-08 62.0 303 24.8
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 1.6e-07 61.2 84 46.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-07 61.2 289 24.2
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.8e-07 60.5 122 32.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 3.6e-07 60.1 214 25.7
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.7e-07 59.7 289 24.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.7e-07 59.7 289 24.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.8e-06 57.8 196 27.6
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-06 56.2 196 27.6


User provided reference genes

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