Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1318.1 676 100.0
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1241.9 678 94.0
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 0.0e+00 1229.2 683 92.7
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 0.0e+00 1226.5 682 92.2
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 0.0e+00 1209.5 748 85.0
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 0.0e+00 1204.1 734 86.1
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 0.0e+00 1204.1 679 89.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 0.0e+00 1176.4 679 87.9
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 0.0e+00 1176.0 679 88.1
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 0.0e+00 1165.2 679 87.3
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 0.0e+00 1135.2 634 89.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 0.0e+00 1102.0 706 79.9
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 5.3e-290 1000.7 712 72.1
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 5.5e-247 857.8 673 62.9
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.6e-246 856.3 670 64.2
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 8.8e-245 850.5 494 87.0
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.5e-244 849.7 652 64.1
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 2.6e-244 849.0 657 63.5
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.3e-243 846.7 670 63.1
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 6.3e-243 844.3 655 62.9
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.3e-243 844.3 665 63.9
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 2.4e-242 842.4 667 62.8
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.3e-242 841.3 665 63.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.3e-242 841.3 665 63.8
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 9.1e-242 840.5 666 63.7
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.6e-241 839.0 653 62.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.6e-241 839.0 666 63.5
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.9e-241 837.8 667 62.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.2e-240 835.9 647 64.1
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.9e-240 835.5 667 62.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 6.5e-240 834.3 701 60.5
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.1e-239 833.6 667 63.1
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.1e-239 833.6 672 62.4
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.4e-239 833.2 665 63.2
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.5e-239 832.4 661 62.5
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.2e-239 832.0 650 62.2
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.2e-238 830.1 671 62.6
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.6e-238 829.7 671 61.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 1.6e-238 829.7 648 63.4
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 6.1e-238 827.8 679 62.4
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 8.0e-238 827.4 665 62.1
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 8.0e-238 827.4 671 61.8
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 8.0e-238 827.4 646 63.0
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 3.0e-237 825.5 651 61.6
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.5e-236 823.2 648 63.9
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 2.0e-236 822.8 644 63.5
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 4.4e-236 821.6 674 60.2
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 1.3e-235 820.1 655 61.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.1e-234 817.0 672 61.0
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.4e-234 816.6 644 62.9
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 2.4e-234 815.8 668 61.2
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 3.1e-234 815.5 669 61.3
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 4.1e-234 815.1 675 59.9
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.2e-233 813.5 662 61.5
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 5.9e-233 811.2 666 61.6
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 7.7e-233 810.8 667 60.9
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 3.8e-232 808.5 667 60.6
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 7.2e-231 804.3 664 61.7
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-229 800.0 649 61.2
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.8e-229 799.7 694 57.9
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.8e-229 799.7 657 60.1
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.5e-228 796.6 659 61.2
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.5e-228 796.6 679 59.8
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.2e-225 786.9 667 60.6
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 3.5e-225 785.4 737 56.2
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.0e-224 783.9 671 60.4
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.0e-224 783.9 667 58.9
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 6.5e-224 781.2 666 59.3
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 8.0e-222 774.2 668 56.9
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.4e-221 773.5 667 58.2
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.3e-221 772.7 665 58.3
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 4.0e-221 771.9 636 61.5
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 3.4e-220 768.8 721 54.5
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.6e-217 760.0 652 58.3
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.1e-215 753.8 581 64.0
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 7.2e-215 751.1 696 56.8
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.0e-213 745.3 665 58.3
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 5.2e-213 745.0 659 57.8
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.2e-212 743.8 558 67.4
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-210 736.1 580 62.2
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 5.4e-210 734.9 648 57.9
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 7.8e-209 731.1 664 57.2
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 2.3e-208 729.6 650 59.5
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.4e-204 715.3 658 55.2
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.2e-203 713.0 693 54.3
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.4e-202 710.3 583 62.3
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 3.2e-202 709.1 573 60.9
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 7.0e-202 708.0 636 56.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.6e-198 696.8 666 54.5
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 5.2e-197 691.8 668 54.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 7.5e-196 688.0 675 52.7
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 2.2e-195 686.4 715 51.5
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 4.1e-194 682.2 675 51.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.6e-192 674.9 662 52.7
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 3.2e-186 656.0 515 64.1
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.5e-183 646.4 665 52.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.8e-181 640.2 617 53.5
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.0e-176 624.4 655 52.1
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-163 580.1 595 51.3
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 5.3e-157 558.9 664 44.1
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.3e-152 544.3 646 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.0e-132 477.2 710 40.0
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.3e-128 463.8 353 66.3
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.8e-120 437.6 580 45.2
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 1.2e-108 398.3 321 62.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.2e-81 308.5 189 83.1
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 6.2e-81 306.2 388 46.6
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 1.8e-80 304.7 300 51.0
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 8.9e-80 302.4 356 48.6
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.8e-73 280.8 663 30.8
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.9e-70 270.0 237 59.1
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 4.9e-62 243.4 336 43.5
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 1.0e-43 182.6 309 33.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 3.4e-39 167.5 315 34.0
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 7.6e-39 166.4 728 26.4
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 9.6e-34 149.4 118 61.0
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.3e-27 129.0 176 43.2
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.5e-26 124.8 123 52.8
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 6.9e-24 116.7 104 59.6
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 2.2e-22 111.7 93 58.1
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.9e-22 111.3 62 87.1
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.9e-22 111.3 62 87.1
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.8e-17 94.7 95 53.7
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.2e-13 81.3 70 57.1
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.7e-12 77.4 80 43.8
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.1e-10 72.8 103 38.8
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 5.7e-10 70.5 84 46.4
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.8e-09 67.4 84 46.4
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.1e-08 66.2 42 71.4
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 1.1e-08 66.2 46 58.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.4e-08 65.1 42 69.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-08 65.1 66 50.0
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 7.0e-08 63.5 38 73.7
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-07 62.8 73 43.8
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 2.2e-06 58.5 42 66.7


User provided reference genes

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