Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.0e-101 372.5 193 100.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.0e-89 333.6 193 90.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 3.9e-89 331.6 193 89.6
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 9.6e-88 327.0 196 91.3
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.1e-87 325.9 198 90.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 8.2e-87 323.9 196 90.8
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.1e-82 307.8 196 83.7
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.0e-81 307.0 195 82.6
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 7.4e-80 300.8 197 80.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.8e-79 298.9 196 80.6
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.4e-78 296.6 197 80.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.9e-76 288.9 196 80.6
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.9e-76 288.9 204 77.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.5e-76 287.7 198 79.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 7.9e-74 280.8 194 83.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 7.9e-74 280.8 195 79.0
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.8e-73 279.6 197 81.7
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-72 276.6 194 77.8
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.5e-72 275.8 194 81.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.7e-72 273.9 202 72.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.7e-69 264.2 185 75.1
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-67 260.4 197 69.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.8e-62 243.0 193 65.8
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.0e-61 239.6 204 64.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.0e-61 239.6 200 66.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.2e-60 236.1 199 61.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 6.5e-60 234.6 188 63.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-58 229.9 197 67.5
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.7e-58 229.2 206 64.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.6e-58 228.8 195 66.2
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.7e-58 228.4 199 66.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.7e-58 228.4 197 62.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 6.1e-58 228.0 198 64.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 8.0e-58 227.6 205 62.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.3e-57 226.1 207 62.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.3e-57 226.1 202 64.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.0e-57 225.7 199 60.8
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 5.2e-57 224.9 207 59.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.7e-57 224.6 206 64.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 8.8e-57 224.2 206 60.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.0e-56 223.0 198 61.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.0e-56 223.0 198 61.1
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.3e-56 222.2 189 65.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.8e-55 218.4 195 60.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.4e-54 216.9 201 59.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.4e-54 216.9 204 62.3
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-54 216.5 204 62.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.8e-54 216.5 204 62.7
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.0e-54 214.5 204 62.7
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 9.1e-54 214.2 211 59.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 9.1e-54 214.2 210 60.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.2e-53 213.8 208 59.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.2e-53 213.8 203 61.6
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.0e-53 213.0 212 59.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.5e-53 212.2 212 58.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 4.5e-53 211.8 215 56.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.7e-53 211.1 206 63.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.7e-53 211.1 208 57.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.3e-52 210.3 207 62.3
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-52 210.3 207 62.3
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.8e-52 208.8 198 59.1
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.8e-52 208.8 216 59.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.0e-52 208.4 207 58.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.1e-51 207.2 212 55.7
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-51 207.2 204 61.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-51 207.2 197 58.9
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.9e-51 206.5 219 57.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.9e-51 206.5 206 57.8
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.2e-51 205.7 200 57.0
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.2e-51 205.7 215 55.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.2e-51 204.5 189 63.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.2e-51 204.5 197 58.4
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.2e-51 204.5 203 57.6
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 7.2e-51 204.5 208 59.1
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 7.2e-51 204.5 190 60.5
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.6e-50 203.4 213 55.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-50 203.0 204 57.4
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.1e-50 203.0 205 60.0
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.7e-50 201.8 188 56.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.7e-50 201.8 203 57.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.8e-49 199.9 212 56.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.3e-49 199.5 220 55.0
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.0e-49 198.7 197 55.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.2e-48 197.2 202 55.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.0e-48 196.4 213 56.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.4e-48 195.7 195 56.9
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 7.5e-48 194.5 204 55.4
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 9.7e-48 194.1 216 51.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.8e-47 192.6 197 55.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.7e-47 192.2 211 53.6
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.8e-47 191.8 155 65.8
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-46 190.7 217 53.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.4e-46 190.3 197 56.9
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.8e-46 189.9 222 54.1
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.8e-46 189.9 201 53.7
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.8e-46 189.9 202 51.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.4e-46 189.5 213 52.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.1e-46 189.1 196 53.1
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 5.3e-46 188.3 217 53.5
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-45 186.4 202 51.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.0e-45 186.4 204 54.4
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.7e-45 184.5 157 62.4
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.7e-45 184.5 157 63.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.3e-44 183.7 208 50.0
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.3e-44 183.7 178 58.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.8e-44 182.2 183 54.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.8e-44 182.2 214 49.5
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.1e-43 180.6 151 60.9
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.5e-43 180.3 181 56.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 5.5e-43 178.3 205 51.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.2e-39 166.4 129 66.7
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.1e-38 164.1 203 46.8
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.1e-38 162.2 209 49.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.7e-37 159.5 176 52.3
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.3e-36 156.4 213 47.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.0e-36 155.2 175 48.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.3e-35 152.5 201 45.3
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 4.2e-35 152.1 190 44.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 7.2e-35 151.4 195 44.6
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 6.1e-34 148.3 205 44.4
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.0e-34 147.9 129 58.1
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.0e-33 146.0 136 54.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.4e-32 142.5 134 53.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.4e-32 142.5 200 42.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.7e-31 140.2 182 41.8
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.2e-31 139.8 188 44.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.8e-31 139.4 218 41.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.4e-30 135.2 217 41.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-29 134.0 119 64.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.3e-28 129.8 138 54.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.9e-28 129.0 196 38.8
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.3e-27 125.9 144 50.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-27 125.9 135 51.1
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 7.3e-27 124.8 79 59.5
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.2e-24 117.5 191 40.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.5e-24 117.1 102 51.0
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.6e-24 116.3 100 61.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-23 114.0 135 45.2
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.2e-22 107.8 184 39.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-21 107.1 180 41.1
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.7e-21 106.3 148 37.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 3.0e-20 102.8 87 54.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.9e-20 102.4 191 35.6
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.5e-19 100.5 126 50.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-18 97.4 126 50.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 6.2e-18 95.1 97 47.4
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 8.1e-18 94.7 70 71.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.1e-17 92.8 86 47.7
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-15 87.4 86 41.9
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.7e-15 87.0 68 69.1
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.2e-15 86.7 181 37.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-14 84.3 109 43.1
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.4e-14 84.0 133 36.8
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.5e-13 79.3 115 46.1
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.9e-11 73.6 112 46.4
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 7.3e-11 71.6 62 66.1
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.6e-10 70.5 62 66.1
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.3e-09 66.6 164 31.7
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 6.8e-09 65.1 89 46.1
AT1G55710 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.5e-08 63.9 62 62.9
C03p31080 Brassica napus HOM05D004429 ORTHO05D103234 4.4e-08 62.4 57 68.4


User provided reference genes

Program Settings